Protein Overview: YL419_YEAST

General Information:
Name(s) found:	YL419_YEAST [Swiss-Prot]
Description(s) found: Found 2 descriptions. SHOW ALL	Putative ATP-dependent RNA helicase YLR419W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLR419W PE=1 SV=1 [Swiss-Prot]
Organism:	Saccharomyces cerevisiae S288c
Length:	1435 amino acids
Gene Ontology:
Cellular Component:	NONE FOUND
Biological Process:	NONE FOUND
Molecular Function:	NONE FOUND

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKTKNNSK SSTPVNDVPT TAGKKKAKGK KGQEPEPEDD KRAKQQSNRA KVTSTASWTG  60
   61 KLPHTILHET CQKRKWNKVE YDMKKIGDKG FIAIAVLSFT DPKTKETLTA RMNDPTYDKA 120
  121 SGKGLVIPQE TPIEARHMAS TIALYRIAYN TNLHMMLPPN HRKTWYALDD FRKDNLKTDE 180
  181 KRINKLFDLD PFKTMVEDRK LKAQREKEQV AQNNQAQKEQ VARTILSSHG GISSSGKDRQ 240
  241 ERKVASHKNS HNPSLVRFPK KVWENSIFVD LDESSRQLIE TSLKEKIDWQ AKKISHKNET 300
  301 IAENREDLKA KLLTLQFRPK HVEEAMLYKD PLSFLLFNLP EDDLPPFFHK KKGDTKNKVE 360
  361 ITNLPLSTRM IVERLTEIGV SSDEALLALQ QNDMNENEAA GFLTREILPT LNSNTNEPVS 420
  421 ETESIECWNQ ELESLESIYE GCVMDAKEDS HYTLNLIEKL KIKLKVYRTK NYPASLPGIV 480
  481 VSTFDKNYKL PDYIKKQILT RLLHYLQEGN LIGDMLVYHI YEWLKENISK IIDNPGPLIP 540
  541 DSDSKGAINK RNISNGKRSI NNSSSRKFTK TTISEDTLSV LREEYTKRIK SSEYKSMQLV 600
  601 REQLPAWKKQ KVIIDIINKN EVVLITGETG SGKSTQVVQF ILDFLQKEKG DFGKTKIVCT 660
  661 QPRRISAIGL AERVSDERCV TCGEEVGYVI RGVNKTKAST RIKFMTTGVL VRLLQNARTM 720
  721 LENTIVVIDE VHERSIDTDL IVTLMKNLLH RVRGMKIVLM SATVNVDLFK KFFPGLATCH 780
  781 IEGRTFPITD YFLEDILSDL DFKIKREKAL SYDDDSVDER NNDDQYLKPR ADSKFFTSGQ 840
  841 INYDLLCQVV EYVHKRLKAA NDNGSIIVFL PGVGEINKCC NLLANKSNEA DFMVLPLHSA 900
  901 LTPEDQKRVF KKYHGKRKVV VSTNIAETSI TIDDCVATID TGRAKSMFYN PKDNTTKLIE 960
  961 SFISKAEVKQ RRGRAGRVRE GLSYKLFSKN LYENDMISMP IPEIKRIPLE SLYLSVKAMG1020
 1021 IKDVKAFLST ALDAPPLPAL QKAERILTTI GLVDESDKSL TQLGQFISLM PVMDSKHGKL1080
 1081 LIYGILFGCT DISVLLVSIL GIGVLPFIGG FENREKIKKL LCKYESRGDL FAVLEIVRDY1140
 1141 FKIKDSSIKR KYLRDNLLSY NKINEIKSST AQYYSILKDV GFLPMDYKVG SISDLNRNER1200
 1201 NFDILRAILT GAFYPHIARV QLPDVKYLST SSGAVEKDPE AKMIKYWIRS EEYQDKLEEY1260
 1261 KTKISQETQK VDLEDLPLPA TRAFIHPSSV LFSTNSVNLE DAKLLSEVDG PISRQSKIPT1320
 1321 VVKYPFVLFT TSQVTNKLYL RDLTPTTTLS LLLFGGAISY DIGGTIHSPG IVVDNWLPIR1380
 1381 TWCKNGVLIK ELRTQLDEAI RKKLESPDYA KKSQIDNSGA DKTLKIVEKI IASEQ

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Searching the YRC Public Image Repository, found results:

Currently showing to of results.

[View Search in the YRC Public Image Repository]

Searching the YRC Public Image Repository, found no results.

Ginzu Version Information

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

Gene Ontology predictions

No functions predicted.

Term	Confidence	Notes
ligase activity	3.21813427394508	bayes_pls_golite062009
small conjugating protein ligase activity	2.90240103975315	bayes_pls_golite062009
ubiquitin-protein ligase activity	2.70136670663165	bayes_pls_golite062009
acid-amino acid ligase activity	2.00108891190944	bayes_pls_golite062009
binding	1.58040548738005	bayes_pls_golite062009
transcription regulator activity	1.12859634143666	bayes_pls_golite062009
nucleic acid binding	1.04712388093172	bayes_pls_golite062009
DNA binding	0.959326949445296	bayes_pls_golite062009
catalytic activity	0.843965854182766	bayes_pls_golite062009
protein binding	0.601985684548872	bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds	0.280767588028274	bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds	0.280767588028274	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	0.279296868168006	bayes_pls_golite062009
transferase activity	0.130846769102963	bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds	0.10678738084258	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.0748111925362236	bayes_pls_golite062009
kinase activity	0.00493573337799813	bayes_pls_golite062009

No functions predicted.

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.52

Source: Reynolds et al. (2008)

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..122]	deduced	N/A	No confident structure predictions are available.
2	View Details	[123..249]	MSA	1.055994	View MSA. No confident structure predictions are available.
3	View Details	[250..354]	deduced	N/A	No confident structure predictions are available.
4	View Details	[355..411]	Pfam	5.207608	UBA/TS-N domain No confident structure predictions are available.
5	View Details	[412..567]	MSA	4.45499	View MSA. No confident structure predictions are available.
6	View Details	[568..818]	PSI-BLAST	46.154902	Putative DEAD box RNA helicase
7	View Details	[819..999]	PSI-BLAST	46.154902	Putative DEAD box RNA helicase
8	View Details	[1000..1309]	MSA	6.520942	View MSA. No confident structure predictions are available.
9	View Details	[1310..1435]	MSA	2.05299	View MSA. No confident structure predictions are available.

Protein Overview: YL419_YEAST

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: