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Protein Overview: RRP43_YEAST

General Information:
Name(s) found: RRP43_YEAST [Swiss-Prot]
Description(s) found:
Found 2 descriptions.
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  • Exosome complex component RRP43 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRP43 PE=1 SV=2 [Swiss-Prot]
    • Organism: Saccharomyces cerevisiae S288c
    Length: 394 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAESTTLETI EIHPITFPPE VLARISPELS LQRHLSLGIR PCLRKYEEFR DVAIENNTLS  60
   61 RYADAGNIDT KNNILGSNVL KSGKTIVITS ITGGIIEETS AAIKDLDDFG EEELFEVTKE 120
  121 EDIIANYASV YPVVEVERGR VGACTDEEMT ISQKLHDSIL HSRILPKKAL KVKAGVRSAN 180
  181 EDGTFSVLYP DELEDDTLNE TNLKMKRKWS YVLYAKIVVL SRTGPVFDLC WNSLMYALQS 240
  241 VKLPRAFIDE RASDLRMTIR TRGRSATIRE TYEIICDQTK SVPLMINAKN IAFASNYGIV 300
  301 ELDPECQLQN SDNSEEEEVD IDMDKLNTVL IADLDTEAEE TSIHSTISIL AAPSGNYKQL 360
  361 TLVGGGAKIT PEMIKRSLLL SRVRADDLST RFNI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..277] Pfam 42.026872 3' exoribonuclease family, domain 1 No confident structure predictions are available.
    2 View Details [278..394] Pfam 14.455932 3' exoribonuclease family, domain 2 No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ribonuclease activity
    		•  7.23127959979732 bayes_pls_golite062009
  • exoribonuclease activity
    		•  7.1818107582098 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  7.15162444368945 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
    		•  6.07082095113089 bayes_pls_golite062009
  • 3'-5' exonuclease activity
    		•  3.97196194079029 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  3.56720447478991 bayes_pls_golite062009
  • exonuclease activity
    		•  3.17253431625181 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  2.74672075915955 bayes_pls_golite062009
  • RNA binding
    		•  1.95606366707311 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  1.71911386517518 bayes_pls_golite062009
  • structural molecule activity
    		•  1.54100243929123 bayes_pls_golite062009
  • hydrolase activity
    		•  1.48006994106758 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.21692959363145 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.06421277984865 bayes_pls_golite062009
  • mRNA binding
    		•  1.04070984651466 bayes_pls_golite062009
  • binding
    		•  0.958185654055629 bayes_pls_golite062009
  • DNA binding
    		•  0.849730288865394 bayes_pls_golite062009
  • catalytic activity
    		•  0.832312651473597 bayes_pls_golite062009
  • nuclease activity
    		•  0.455660692064928 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle