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Protein Overview: gi|52353567, gi|...

General Information:
Name(s) found: gi|52353567 [NCBI NR]
gi|255675942 [NCBI NR]
Description(s) found:
Found 3 descriptions.
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  • gi|52353567|gb|AAU44133.1| putative tRNA synthase [Oryza sativa Japonica Group] [NCBI NR]
  • gi|255675942|dbj|BAF16342.2| Os05g0108000 [Oryza sativa Japonica Group] [NCBI NR]
    • Organism: Oryza sativa Japonica Group
    Length: 488 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRTGGGARA TAAAQLLSSS SSPPPLRLPR RFLSLTATPY PLYYDLLLYR PSYPNPPKSS  60
   61 AADDRHTRPT DDHLDRAKRR YLRKRRSRLL PDPDATTAKP SSSSSSEFVE LKPEVVDFPR 120
  121 LHAREEALYF HDAFALPWEK DKHYRMLYRL EKKYFPDQSL DNAFVPADAS PPSSDAADKG 180
  181 LVFFDDDDNN KEAEVKKKKD GEDRGEVLER KVEDFFRSLK KGPGHGEANV MKAKKKEPPQ 240
  241 VRHEADEWPQ PHLASRRTEL PPRWNGPTGT VVLIDKPKGW TSFTVCGKLR RLVNVQKVGH 300
  301 AGTLDPMATG LLIVCVGKAT KVVDRYQGMV KGYSGVFRLG EATSTWDADS PVIQREPWEH 360
  361 IKDEDIRKVA ASFRGEIWQV PPMFSAIKVG GEKMYDKARR GETVELSPRR ISIHQFDIER 420
  421 SLEDRQNLIF RVICSKGTYI RSLCADLGKA LGSCAHLTAL RRDSIGDFSV NDAWSFAELE 480
  481 EQITKGYL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..190] deduced N/A No confident structure predictions are available.
    2 View Details [191..258] MSA 1.077992 View MSA. No confident structure predictions are available.
    3 View Details [259..488] PSI-BLAST 82.39794 Crystal Structure of tRNA Pseudouridine Synthase TruB and Its RNA Complex: RNA-protein Recognition Through a Combination of Rigid Docking and Induced Fit

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • pseudouridine synthase activity
    		•  5.60483019625575 bayes_pls_golite062009
  • intramolecular transferase activity
    		•  4.62815459483632 bayes_pls_golite062009
  • isomerase activity
    		•  3.43067391737824 bayes_pls_golite062009
  • catalytic activity
    		•  2.39224964671205 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle