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Protein Overview: gi|125595294, gi...

General Information:
Name(s) found: gi|52353538 [NCBI NR]
gi|222632636 [NCBI NR]
gi|125595294 [NCBI NR]
gi|115465563 [NCBI NR]
gi|113579932 [NCBI NR]
Description(s) found:
Found 8 descriptions.
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  • gi|52353538|gb|AAU44104.1| isocitrate dehydrogenase [Oryza sativa Japonica Group] [NCBI NR]
  • gi|222632636|gb|EEE64768.1| hypothetical protein OsJ_19624 [Oryza sativa Japonica Group] [NCBI NR]
  • gi|125595294|gb|EAZ35353.1| hypothetical protein OsJ_018836 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|115465563|ref|NP_001056381.1| Os05g0573200 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|113579932|dbj|BAF18295.1| Os05g0573200 [Oryza sativa Japonica Group] [NCBI NR]
    • Organism: Oryza sativa Japonica Group
    Length: 412 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTKIKVAN PIVEMDGDEM TRVFWKSIKD KLIFPFLELD IKYFDLGLPY RDQTDDKVTV  60
   61 EAAEATLKYN VAIKCATITP DEARVKEFSL KSMWKSPNGT IRNILNGTVF REPIICKNIP 120
  121 RLVPGWTKPI CIGRHAFGDQ YRATDAVIKG PGKLKLVYEG KDEEIELEVF NFTGAGGVAQ 180
  181 SMYNTDESIR SFAEASMATA YEKKWPLYLS TKNTILKKYD GRFKDIFQEV YEAQWKSKFE 240
  241 AAGIWYEHRL IDDMVAYALK SEGGYVWACK NYDGDVQSDF LAQGFGSLGL MTSVLVCPDG 300
  301 KTIEAEAAHG TVTRHYRVHQ KGGETSTNSI ASIFAWTRGL AHRAKLDDNA RLLDFTQKLE 360
  361 AACIGAVESG KMTKDLALLV HGSSNVTRSH YLNTEEFIDA VADELRSRLA AN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..412] PSI-BLAST 128.0 NADP-dependent isocitrate dehydrogenase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • isocitrate dehydrogenase (NAD+) activity
    		•  5.9567768649084 bayes_pls_golite062009
  • isocitrate dehydrogenase activity
    		•  5.76817846591752 bayes_pls_golite062009
  • isocitrate dehydrogenase (NADP+) activity
    		•  3.47645456015586 bayes_pls_golite062009
  • oxidoreductase activity
    		•  2.74237430402883 bayes_pls_golite062009
  • catalytic activity
    		•  2.71251959637136 bayes_pls_golite062009
  • oxidoreductase activity, acting on CH-OH group of donors
    		•  2.46799258909805 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
    		•  2.38235863668553 bayes_pls_golite062009
  • transferase activity, transferring acyl groups
    		•  1.15484868227001 bayes_pls_golite062009
  • 3-isopropylmalate dehydrogenase activity
    		•  0.848289435089509 bayes_pls_golite062009
  • binding
    		•  0.530580225668688 bayes_pls_golite062009
  • protein binding
    		•  0.074256700284446 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle