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Protein Overview: EG11867

General Information:
Name(s) found: rhaA / EG11867 [EcoGene]
Description(s) found:
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  • L-rhamnose isomerase / L-rhamnose isomerase [EcoGene]
  • L-rhamnose isomerase [Escherichia coli K12] [nr-271106-contam.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • L-rhamnose isomerase [Escherichia coli str. K-12 substr. MG1655] [Ecoli-contam-Dam1-Mind-COMA-MBP-110.fasta]
    • Organism: Escherichia coli str. K-12 substr. MG1655
    Length: 419 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IEA]
    Biological Process: L-lyxose metabolic process [IEPLink to PubMed article]
    rhamnose catabolic process [IMPLink to PubMed article]
    Molecular Function: zinc ion binding [IEA]
    metal ion binding [IEA]
    manganese ion binding [IEA]
    L-rhamnose isomerase activity [IDALink to PubMed article][IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTQLEQAWE LAKQRFAAVG IDVEEALRQL DRLPVSMHCW QGDDVSGFEN PEGSLTGGIQ  60
   61 ATGNYPGKAR NASELRADLE QAMRLIPGPK RLNLHAIYLE SDTPVSRDQI KPEHFKNWVE 120
  121 WAKANQLGLD FNPSCFSHPL SADGFTLSHA DDSIRQFWID HCKASRRVSA YFGEQLGTPS 180
  181 VMNIWIPDGM KDITVDRLAP RQRLLAALDE VISEKLNPAH HIDAVESKLF GIGAESYTVG 240
  241 SNEFYMGYAT SRQTALCLDA GHFHPTEVIS DKISAAMLYV PQLLLHVSRP VRWDSDHVVL 300
  301 LDDETQAIAS EIVRHDLFDR VHIGLDFFDA SINRIAAWVI GTRNMKKALL RALLEPTAEL 360
  361 RKLEAAGDYT ARLALLEEQK SLPWQAVWEM YCQRHDTPAG SEWLESVRAY EKEILSRRG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..419] PSI-BLAST 143.0 L-rhamnose isomerase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • L-rhamnose isomerase activity
    		•  2.97742753653623 bayes_pls_golite062009
  • intramolecular oxidoreductase activity, interconverting aldoses and ketoses
    		•  2.11238407518359 bayes_pls_golite062009
  • catalytic activity
    		•  1.66019571685402 bayes_pls_golite062009
  • intramolecular oxidoreductase activity
    		•  1.64435640749982 bayes_pls_golite062009
  • xylose isomerase activity
    		•  1.22142207909888 bayes_pls_golite062009
  • nuclease activity
    		•  0.545216999092421 bayes_pls_golite062009
  • isomerase activity
    		•  0.52890695130173 bayes_pls_golite062009
  • hydrolase activity
    		•  0.256751668918719 bayes_pls_golite062009
  • endonuclease activity
    		•  0.0786880297920596 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle