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Protein Overview: EG10329

General Information:
Name(s) found: mutM / EG10329 [EcoGene]
Description(s) found:
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  • formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase / Formamidopyrimidine-DNA glycosylase/AP lyase; 5'-terminal deoxyribophosphodiesterase; DNA repair; GC to TA; binds Zn(II) [EcoGene]
  • formamidopyrimidine-DNA glycosylase [Escherichia coli] [nr-271106-contam.fasta]
  • formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase [Escherichia coli K12] [nr-271106-contam.fasta]
  • formamidopyrimidine-DNA glycosylase [Escherichia coli K12] [nr-271106-contam.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase [Escherichia coli str. K-12 substr. MG1655] [Ecoli-contam-Dam1-Mind-COMA-MBP-110.fasta]
    • Organism: Escherichia coli str. K-12 substr. MG1655
    Length: 269 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: DNA repair [IEA]
    base-excision repair [IEA]
    metabolic process [IEA]
    nucleotide-excision repair [IEA]
    response to DNA damage stimulus [IDALink to PubMed article][IEA]
    Molecular Function: nucleic acid binding [IEA]
    DNA binding [IEA]
    zinc ion binding [IDALink to PubMed article][IEA]
    metal ion binding [IDALink to PubMed article][IEA]
    endonuclease activity [UNKNOWNLink to PubMed article][IDALink to PubMed articleLink to PubMed articleLink to PubMed article]
    lyase activity [IEA]
    DNA N-glycosylase activity [UNKNOWNLink to PubMed article][IDALink to PubMed articleLink to PubMed articleLink to PubMed article]
    DNA-(apurinic or apyrimidinic site) lyase activity [IDALink to PubMed articleLink to PubMed article][IEA]
    damaged DNA binding [IDALink to PubMed article][IEA]
    oxidized purine base lesion DNA N-glycosylase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPELPEVETS RRGIEPHLVG ATILHAVVRN GRLRWPVSEE IYRLSDQPVL SVQRRAKYLL  60
   61 LELPEGWIII HLGMSGSLRI LPEELPPEKH DHVDLVMSNG KVLRYTDPRR FGAWLWTKEL 120
  121 EGHNVLTHLG PEPLSDDFNG EYLHQKCAKK KTAIKPWLMD NKLVVGVGNI YASESLFAAG 180
  181 IHPDRLASSL SLAECELLAR VIKAVLLRSI EQGGTTLKDF LQSDGKPGYF AQELQVYGRK 240
  241 GEPCRVCGTP IVATKHAQRA TFYCRQCQK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..269] PSI-BLAST 106.0 DNA repair protein MutM (Fpg)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • structural constituent of ribosome
    		•  2.37911289746472 bayes_pls_golite062009
  • structural molecule activity
    		•  2.10984179872151 bayes_pls_golite062009
  • binding
    		•  1.7313696856499 bayes_pls_golite062009
  • DNA binding
    		•  1.22619720972604 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.17199530230795 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.16376707327858 bayes_pls_golite062009
  • protein binding
    		•  1.14219782236887 bayes_pls_golite062009
  • transcription factor activity
    		•  0.472763834470731 bayes_pls_golite062009
  • catalytic activity
    		•  0.161830442565647 bayes_pls_golite062009
  • lyase activity
    		•  0.0836281676510939 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.89

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle