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Protein Overview: EG10055

General Information:
Name(s) found: araD / EG10055 [EcoGene]
Description(s) found:
Found 4 descriptions.
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  • L-ribulose-5-phosphate 4-epimerase / L-ribulose-5-phosphate 4-epimerase [EcoGene]
    • Organism: Escherichia coli str. K-12 substr. MG1655
    Length: 231 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: L-lyxose metabolic process [IMPLink to PubMed article]
    L-arabinose catabolic process to xylulose 5-phosphate [IEPLink to PubMed article]
    Molecular Function: zinc ion binding [IEA]
    metal ion binding [IEA]
    L-ribulose-phosphate 4-epimerase activity [IDALink to PubMed article][IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEDLKRQVL EANLALPKHN LVTLTWGNVS AVDRERGVFV IKPSGVDYSV MTADDMVVVS  60
   61 IETGEVVEGT KKPSSDTPTH RLLYQAFPSI GGIVHTHSRH ATIWAQAGQS IPATGTTHAD 120
  121 YFYGTIPCTR KMTDAEINGE YEWETGNVIV ETFEKQGIDA AQMPGVLVHS HGPFAWGKNA 180
  181 EDAVHNAIVL EEVAYMGIFC RQLAPQLPDM QQTLLDKHYL RKHGAKAYYG Q

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..231] PSI-BLAST 66.0 L-ribulose-5-phosphate 4-epimerase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • L-ribulose-phosphate 4-epimerase activity
    		•  3.50507333471987 bayes_pls_golite062009
  • L-fuculose-phosphate aldolase activity
    		•  2.43949811564444 bayes_pls_golite062009
  • catalytic activity
    		•  1.9511172460719 bayes_pls_golite062009
  • aldehyde-lyase activity
    		•  1.08084403816388 bayes_pls_golite062009
  • lyase activity
    		•  0.77829514510632 bayes_pls_golite062009
  • racemase and epimerase activity, acting on carbohydrates and derivatives
    		•  0.42493443904865 bayes_pls_golite062009
  • carbon-carbon lyase activity
    		•  0.2178091782272 bayes_pls_golite062009
  • racemase and epimerase activity
    		•  0.15063402811264 bayes_pls_golite062009
  • isomerase activity
    		•  0.0458367676418101 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle