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Protein Overview: PMS1_ARATH

General Information:
Name(s) found: PMS1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|18411951|ref|NP_567236.1| PMS1 (POSTMEIOTIC SEGREGATION 1); ATP binding / mismatched DNA binding [Arabidopsis thaliana] [NCBI NR]
  • gi|15617225|gb|AAL01156.1| DNA mismatch repair protein [Arabidopsis thaliana] [NCBI NR]
  • DNA mismatch repair protein PMS1 OS=Arabidopsis thaliana GN=PMS1 PE=1 SV=1 [Swiss-Prot]
  • DNA mismatch repair protein [Arabidopsis thaliana]gi|18411951|ref|NP_567236.1| DNA mismatch repair protein, putative [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 DNA mismatch repair protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | DNA mismatch repair protein, putative | chr4:1076306-1080510 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • DNA mismatch repair protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ATP binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • PMS1 (POSTMEIOTIC SEGREGATION 1); ATP binding / mismatched DNA binding [Arabidopsis thaliana] [NCBI-RefSeq_Human_na_04-23-2010_reversed.fasta]
  • | Symbols: PMS1 | DNA mismatch repair protein, putative | chr4:1076306-1080510 REVERSE LENGTH=923 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 923 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IC]
    Biological Process: fruit development [IMP]
    DNA recombination [IMP]
    pollen development [IMP]
    seed development [IMP]
    mismatch repair [IMP][ISS]
    Molecular Function: ATP binding [IEA][ISS]
    mismatched DNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGDSSPSPT TTSSPLIRPI NRNVIHRICS GQVILDLSSA VKELVENSLD AGATSIEINL  60
   61 RDYGEDYFQV IDNGCGISPT NFKVLALKHH TSKLEDFTDL LNLTTYGFRG EALSSLCALG 120
  121 NLTVETRTKN EPVATLLTFD HSGLLTAEKK TARQIGTTVT VRKLFSNLPV RSKEFKRNIR 180
  181 KEYGKLVSLL NAYALIAKGV RFVCSNTTGK NPKSVVLNTQ GRGSLKDNII TVFGISTFTS 240
  241 LQPVSICVSE DCRVEGFLSK PGQGTGRNLA DRQYFFINGR PVDMPKVSKL VNELYKDTSS 300
  301 RKYPVTILDF IVPGGACDLN VTPDKRKVFF SDETSVIGSL REGLNEIYSS SNASYIVNRF 360
  361 EENSEQPDKA GVSSFQKKSN LLSEGIVLDV SSKTRLGEAI EKENPSLREV EIDNSSPMEK 420
  421 FKFEIKACGT KKGEGSLSVH DVTHLDKTPS KGLPQLNVTE KVTDASKDLS SRSSFAQSTL 480
  481 NTFVTMGKRK HENISTILSE TPVLRNQTSS YRVEKSKFEV RALASRCLVE GDQLDDMVIS 540
  541 KEDMTPSERD SELGNRISPG TQADNVERHE REHEKPIRFE EPTSDNTLTK GDVERVSEDN 600
  601 PRCSQPLRSV ATVLDSPAQS TGPKMFSTLE FSFQNLRTRR LERLSRLQST GYVSKCMNTP 660
  661 QPKKCFAAAT LELSQPDDEE RKARALAAAT SELERLFRKE DFRRMQVLGQ FNLGFIIAKL 720
  721 ERDLFIVDQH AADEKFNFEH LARSTVLNQQ PLLQPLNLEL SPEEEVTVLM HMDIIRENGF 780
  781 LLEENPSAPP GKHFRLRAIP YSKNITFGVE DLKDLISTLG DNHGECSVAS SYKTSKTDSI 840
  841 CPSRVRAMLA SRACRSSVMI GDPLRKNEMQ KIVEHLADLE SPWNCPHGRP TMRHLVDLTT 900
  901 LLTLPDDDNV NDDDDDDATI SLA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..199] PSI-BLAST 70.39794 DNA mismatch repair protein PMS2
    2 View Details [200..619] PSI-BLAST 33.69897 No description for 2cgeA was found.
    3 View Details [620..708] deduced N/A No confident structure predictions are available.
    4 View Details [709..923] PSI-BLAST 18.69897 Crystal structure of the MutL C-terminal domain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle