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Protein Overview: PTR24_ARATH

General Information:
Name(s) found: PTR24_ARATH [Swiss-Prot]
Description(s) found:
Found 10 descriptions.
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  • Protein NRT1/ PTR FAMILY 5.11 OS=Arabidopsis thaliana GN=NPF5.11 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 538 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEA][ISS]
    Biological Process: oligopeptide transport [IEA][ISS]
    Molecular Function: transporter activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAITYSSADE LGNTTEGFLE IRENTSGGWK SARLIIVVQM AERFAYFGIA SNLIMYLTGP  60
   61 LGESTAAAAA NVNAWTGTVA FLPLLGGFLA DSYLGRFRTI IISSSLYILG LGLLSFSTMI 120
  121 PSHQSKDSNQ LQETIFFFSL YLVAIGQGGY NPCIKVFGAD QFDGNDHKEA RDKSSFFNWL 180
  181 MFGNCISILT TRLVSTYIQE NLSWSLGFGI PSVSMLLSLF LFLLGTTSYR FSTERVGKKN 240
  241 PFARISRVFM EALKNRRQPD LDIANANANE TLLLLAHQSS KQFRFLDRAA ISCELAEIEE 300
  301 AKAVLRLIPI WITSVVYTIV HAQSPTFFTK QGATMDRSIS PGLLVPAATL QSFINLSVVV 360
  361 FIPIYDRLLV PFARSFTQNS SGITTLQRIG TGIFLSILAM VLAALVETKR LQAARDELSI 420
  421 PMSVWWLIPQ YVIFGVSDMF TMVGLQEFFY GQVPSELRSV GMALNLSIYG AGNYLSSFMI 480
  481 SVIDKITNQY GQRSWFDNDL DQAHLDYFYW LLACLGFIGF AFYLWFAKSY VYSRSNTF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..452] PSI-BLAST 8.522879 Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
    2 View Details [453..538] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transporter activity
    		•  2.54286095434601 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  2.01247278444729 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  1.77039368764865 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  1.66673693200184 bayes_pls_golite062009
  • organic acid transmembrane transporter activity
    		•  1.27747734153012 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  0.33203350453105 bayes_pls_golite062009
  • polyol transmembrane transporter activity
    		•  0.24475883286552 bayes_pls_golite062009
  • alcohol transmembrane transporter activity
    		•  0.24475883286552 bayes_pls_golite062009
  • glycerol transmembrane transporter activity
    		•  0.2309068592963 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  0.18188709249385 bayes_pls_golite062009
  • binding
    		•  0.105551689569449 bayes_pls_golite062009
  • glycerol-3-phosphate transmembrane transporter activity
    		•  1.26964387230144E-4 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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