YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTR24_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	42	0.90
Transmembrane Helix	43	59	0.86
Non-Cytoplasmic	60	71	0.60
Transmembrane Helix	72	90	0.90
Cytoplasmic	91	99	0.69
Transmembrane Helix	100	120	0.89
Non-Cytoplasmic	121	134	0.81
Transmembrane Helix	135	154	0.90
Cytoplasmic	155	174	0.90
Transmembrane Helix	175	196	0.91
Non-Cytoplasmic	197	205	0.80
Transmembrane Helix	206	229	0.86
Cytoplasmic	230	306	0.97
Transmembrane Helix	307	324	0.57
Non-Cytoplasmic	325	342	0.55
Transmembrane Helix	343	365	0.88
Cytoplasmic	366	384	0.54
Transmembrane Helix	385	406	0.92
Non-Cytoplasmic	407	426	0.54
Transmembrane Helix	427	450	0.80
Cytoplasmic	451	460	0.53
Transmembrane Helix	461	483	0.69
Non-Cytoplasmic	484	506	0.70
Transmembrane Helix	507	527	0.95
Cytoplasmic	528	538	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAITYSSADE LGNTTEGFLE IRENTSGGWK SARLIIVVQM AERFAYFGIA SNLIMYLTGP  60
   61 LGESTAAAAA NVNAWTGTVA FLPLLGGFLA DSYLGRFRTI IISSSLYILG LGLLSFSTMI 120
  121 PSHQSKDSNQ LQETIFFFSL YLVAIGQGGY NPCIKVFGAD QFDGNDHKEA RDKSSFFNWL 180
  181 MFGNCISILT TRLVSTYIQE NLSWSLGFGI PSVSMLLSLF LFLLGTTSYR FSTERVGKKN 240
  241 PFARISRVFM EALKNRRQPD LDIANANANE TLLLLAHQSS KQFRFLDRAA ISCELAEIEE 300
  301 AKAVLRLIPI WITSVVYTIV HAQSPTFFTK QGATMDRSIS PGLLVPAATL QSFINLSVVV 360
  361 FIPIYDRLLV PFARSFTQNS SGITTLQRIG TGIFLSILAM VLAALVETKR LQAARDELSI 420
  421 PMSVWWLIPQ YVIFGVSDMF TMVGLQEFFY GQVPSELRSV GMALNLSIYG AGNYLSSFMI 480
  481 SVIDKITNQY GQRSWFDNDL DQAHLDYFYW LLACLGFIGF AFYLWFAKSY VYSRSNTF