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Protein Overview: gi|18412253, gi|...

General Information:
Name(s) found: gi|23397166 [NCBI NR]
gi|18412253 [NCBI NR]
gi|11762132 [NCBI NR]
Description(s) found:
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  • gi|23397166|gb|AAN31866.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18412253|ref|NP_567126.1| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|11762132|gb|AAG40344.1|AF324992_1 AT3g62110 [Arabidopsis thaliana] [NCBI NR]
  • unknown protein [Arabidopsis thaliana]gi|11762132|gb|AAG40344.1| AT3g62110 [Arabidopsis thaliana]gi|18412253|ref|NP_567126.1| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Glycoside hydrolase family 28 protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein | chr3:23008288-23010478 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • polygalacturonase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • AT3g62110 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Pectin lyase-like superfamily protein | chr3:22997313-22999503 REVERSE LENGTH=471 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • AT3g62110 OS=Arabidopsis thaliana GN=AT3g62110/T17J13_70 PE=2 SV=1 [ARATH-contam.fasta]
  • AT3g62110 OS=Arabidopsis thaliana GN=At3g62110 PE=2 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 471 amino acids

    Gene Ontology:
    Cellular Component: vacuole [IDA]
    Biological Process: carbohydrate metabolic process [ISS]
    Molecular Function: polygalacturonase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRSFLLLYV LLVQAFYGAW CSVGESLHCE YSNLASLHRP HSVSITEFGA VGDGVTLNTK  60
   61 AFQNALFYLN SFSDKGGAKL FVPAGQWLTG SFDLISHLTL WLDKGATILG STSSENWPVV 120
  121 DPLPSYGRGR ELPGRRHRSL IYGQNLTDVV ITGENGTIDG QGTVWWDWFR NGELNYTRPH 180
  181 LVELMNSTGL IISNLTFLNS PFWNIHPVYC RDVVVKNLTI LAPLESPNTD GVDPDSSTNV 240
  241 CIEDCYIVTG DDLVSIKSGW DEYGISYARP SSKIKINRLT GQTTSSSGIA IGSEMSGGVS 300
  301 EIYIKDLHLF NSNTGIRIKT SAGRGGYVRN VHILNVKLDN VKKAIRFTGK YGEHPDEKYD 360
  361 PKALPAIEKI TFENVNGDGI GVAGLLEGIE GDVFKNICFL NVTLRVKKNS KKSPWECSNV 420
  421 RGYSQWVSPE ITCDSLKESI FPEHGSDCFG LSENNMEISS GLSRSPWLLS W

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..471] PSI-BLAST 58.0 No description for 2uveA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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