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Protein Overview: HDA9_ARATH

General Information:
Name(s) found: HDA9_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|75244587|sp|Q8H0W2.1|HDA9_ARATH RecName: Full=Histone deacetylase 9 [NCBI NR]
  • gi|30692236|ref|NP_190054.2| HDA9 (HISTONE DEACETYLASE 9); histone deacetylase [Arabidopsis thaliana] [NCBI NR]
  • gi|30387509|gb|AAP31920.1| At3g44680 [Arabidopsis thaliana] [NCBI NR]
  • gi|25082914|gb|AAN72014.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • Histone deacetylase 9 OS=Arabidopsis thaliana GN=HDA9 PE=1 SV=1 [Swiss-Prot]
  • At3g44680 [Arabidopsis thaliana]gi|25082914|gb|AAN72014.1| putative protein [Arabidopsis thaliana]gi|30692236|ref|NP_190054.2| histone deacetylase, putative [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Histone deacetylase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: HDA09, HDA9 | HDA9 (histone deacetylase 9); histone deacetylase | chr3:16237756-16240739 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • HDA9; histone deacetylase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At3g44680 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: HDA9, HDA09 | histone deacetylase 9 | chr3:16226769-16229752 REVERSE LENGTH=426 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Histone deacetylase 9 OS=Arabidopsis thaliana GN=HDA9 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 426 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA][ISS]
    Biological Process: histone deacetylation [IEA][ISS]
    Molecular Function: histone deacetylase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSKDKISYF YDGDVGSVYF GPNHPMKPHR LCMTHHLILA YGLHSKMEVY RPHKAYPIEM  60
   61 AQFHSPDYVE FLQRINPENQ NLFPNEMARY NLGEDCPVFE DLFEFCQLYA GGTIDAARRL 120
  121 NNKLCDIAIN WAGGLHHAKK CDASGFCYIN DLVLGILELL KHHPRVLYID IDVHHGDGVE 180
  181 EAFYFTDRVM TVSFHKFGDK FFPGTGDVKE IGEREGKFYA INVPLKDGID DSSFNRLFRT 240
  241 IISKVVEIYQ PGAIVLQCGA DSLARDRLGC FNLSIDGHAE CVKFVKKFNL PLLVTGGGGY 300
  301 TKENVARCWT VETGILLDTE LPNEIPENDY IKYFAPDFSL KIPGGHIENL NTKSYISSIK 360
  361 VQILENLRYI QHAPSVQMQE VPPDFYIPDF DEDEQNPDVR ADQRSRDKQI QRDDEYFDGD 420
  421 NDNDAS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..426] PSI-BLAST 95.0 No description for 2v5xA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle