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View Structure Prediction Details

Protein: HDA9_ARATH
Organism: Arabidopsis thaliana
Length: 426 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HDA9_ARATH.

Description E-value Query
Range
Subject
Range
HDAC1_CHICK - Histone deacetylase 1 OS=Gallus gallus GN=HDAC1 PE=2 SV=1
502.0 [0..2] [425..6]

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Predicted Domain #1
Region A:
Residues: [1-426]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSKDKISYF YDGDVGSVYF GPNHPMKPHR LCMTHHLILA YGLHSKMEVY RPHKAYPIEM  60
   61 AQFHSPDYVE FLQRINPENQ NLFPNEMARY NLGEDCPVFE DLFEFCQLYA GGTIDAARRL 120
  121 NNKLCDIAIN WAGGLHHAKK CDASGFCYIN DLVLGILELL KHHPRVLYID IDVHHGDGVE 180
  181 EAFYFTDRVM TVSFHKFGDK FFPGTGDVKE IGEREGKFYA INVPLKDGID DSSFNRLFRT 240
  241 IISKVVEIYQ PGAIVLQCGA DSLARDRLGC FNLSIDGHAE CVKFVKKFNL PLLVTGGGGY 300
  301 TKENVARCWT VETGILLDTE LPNEIPENDY IKYFAPDFSL KIPGGHIENL NTKSYISSIK 360
  361 VQILENLRYI QHAPSVQMQE VPPDFYIPDF DEDEQNPDVR ADQRSRDKQI QRDDEYFDGD 420
  421 NDNDAS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 95.0
Match: 2v5xA
Description: No description for 2v5xA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle