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Protein Overview: gi|110741994, gi...

General Information:
Name(s) found: gi|30679384 [NCBI NR]
gi|23308455 [NCBI NR]
gi|23296966 [NCBI NR]
gi|22022579 [NCBI NR]
gi|18397118 [NCBI NR]
gi|15810507 [NCBI NR]
gi|110741994 [NCBI NR]
Description(s) found:
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  • gi|30679384|ref|NP_850516.1| transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|23308455|gb|AAN18197.1| At3g05090/T12H1_5 [Arabidopsis thaliana] [NCBI NR]
  • gi|23296966|gb|AAN13212.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|22022579|gb|AAM83246.1| AT3g05090/T12H1_5 [Arabidopsis thaliana] [NCBI NR]
  • gi|18397118|ref|NP_566246.1| transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15810507|gb|AAL07141.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|110741994|dbj|BAE98936.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • At3g05090/T12H1_5 [Arabidopsis thaliana]gi|23296966|gb|AAN13212.1| unknown protein [Arabidopsis thaliana]gi|15810507|gb|AAL07141.1| unknown protein [Arabidopsis thaliana]gi|22022579|gb|AAM83246.1| AT3g05090/T12H1_5 [Arabidopsis thaliana]gi|18397118|re [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Transducin family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | transducin family protein / WD-40 repeat family protein | chr3:1418579-1422729 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • nucleotide binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At3g05090/T12H1_5 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • AT3g05090/T12H1_5 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: LRS1 | Transducin/WD40 repeat-like superfamily protein | chr3:1418573-1422723 REVERSE LENGTH=753 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • AT3g05090/T12H1_5 OS=Arabidopsis thaliana GN=LRS1 PE=2 SV=1 [ARATH-contam.fasta]
  • AT3g05090/T12H1_5 OS=Arabidopsis thaliana GN=LRS1 PE=1 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 753 amino acids

    Gene Ontology:
    Cellular Component: CUL4 RING ubiquitin ligase complex [ISS]
    Biological Process: lateral root formation [IMP]
    Molecular Function: nucleotide binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHRVGSAGSN GGSVRTRKEK KLTYVLNDAN DTKHCAGINC LDVLKSSVSN DQSYLFTGSR  60
   61 DGTLKRWAFD EDATFCSATF ESHVDWVNDA ALAGESTLVS CSSDTTVKTW DGLSDGVCTR 120
  121 TLRQHSDYVT CLAVAAKNNN VVASGGLGGE VFIWDIEAAL SPVTKPNDAN EDSSSNGANG 180
  181 PVTSLRTVGS SNNISVQSSP SHGYTPTIAK GHKESVYALA MNDTGTMLVS GGTEKVLRVW 240
  241 DPRTGSKSMK LRGHTDNVRV LLLDSTGRFC LSGSSDSMIR LWDLGQQRCL HTYAVHTDSV 300
  301 WALACNPSFS HVYSGGRDQC LYLTDLATRE SVLLCTKEHP IQQLALQDNS IWVATTDSSV 360
  361 ERWPAEVQSP KTVFQRGGSF LAGNLSFNRA RVSLEGLNPA PAYKEPSITV PGTHPIVQHE 420
  421 ILNNKRQILT KDAAGSVKLW DITRGVVVED YGKISFEEKK EELFEMVSIP SWFTVDTRLG 480
  481 CLSVHLETPQ CFSAEMYSAD LKVSGRPEDD KINLARETLK GLLGHWLAKK KHKPKPQVLA 540
  541 SGDTLSVKDT KKNLSASKTE ESSAASDPVY PPFEFSSVSP PSIITEGSQG GPWRKKITEF 600
  601 TGTEDEKDFP LWCLDAVLNN RLPPRENTKL SFFLHPCEGS SVQVVTLGKL SAPRILRVHK 660
  661 VTNYVVEKMV LDNPLDSLAI DAASVSGGQP QPLFSGNGLL QSGLKPWQKL RPSIEILCNS 720
  721 QVLSPDMSLA TVRAYVWKKP EDLILNYRVA IAR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..411] PSI-BLAST 67.69897 No description for 2ovpB was found.
    2 View Details [412..553] PSI-BLAST 13.522879 Surface layer protein
    3 View Details [554..602] deduced N/A No confident structure predictions are available.
    4 View Details [603..753] FFAS03 0.97 GABA(A) receptor associated protein GABARAP


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle