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Protein Overview: gi|23297720, gi|...

General Information:
Name(s) found: gi|23297720 [NCBI NR]
gi|18421807 [NCBI NR]
gi|14334948 [NCBI NR]
Description(s) found:
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  • gi|23297720|gb|AAN12910.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18421807|ref|NP_568560.1| zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|14334948|gb|AAK59651.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • unknown protein [Arabidopsis thaliana]gi|14334948|gb|AAK59651.1| unknown protein [Arabidopsis thaliana]gi|18421807|ref|NP_568560.1| zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Zinc finger (C3HC4-type RING finger) family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | zinc finger (C3HC4-type RING finger) family protein | chr5:15589314-15590545 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • protein binding / ubiquitin-protein ligase/ zinc ion binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | RING/U-box superfamily protein | chr5:15572084-15573315 FORWARD LENGTH=221 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Putative uncharacterized protein At5g38895 OS=Arabidopsis thaliana GN=At5g38895 PE=2 SV=1 [ARATH-contam.fasta]
  • Isoform of F4KCY6, Putative uncharacterized protein At5g38895 OS=Arabidopsis thaliana GN=At5g38895 PE=2 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 221 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: response to chitin [IEP]
    Molecular Function: zinc ion binding [IEA][ISS]
    protein binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAFCCCFQV DLFESYVNPN TSITRNCPCL NCFLQSFMDL YASLFSRGGM HPIPSTVETA  60
   61 TVMNSTTALD DSLSSVYHSP PTPLPYDADP RYFRFVKGSS HSGEESEPLR GDTEMSSEAL 120
  121 GDGGAKWSKS DSEDGSKEVY TKGSSTFTKS KTMPGIEVYY ADSDDEDICP TCLDDYTLEN 180
  181 PKIITKCSHH FHLSCIYEWM ERSETCPVCG KVMAFDENET S

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..102] deduced N/A No confident structure predictions are available.
    2 View Details [103..221] PSI-BLAST 10.69897 Crystal Structure of The Cand1-Cul1-Roc1 Complex


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle