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View Structure Prediction Details

Protein: gi|23297720, gi|...
Organism: Arabidopsis thaliana
Length: 221 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23297720, gi|....

Description E-value Query
Range
Subject
Range
gi|37932575 - gi|37932575|gb|AAP76427.1| RAG1 protein [Sciurotamias davidianus]
153.0 [0..65] [220..153]
gi|37932591 - gi|37932591|gb|AAP76435.1| RAG1 protein [Protoxerus stangeri]
153.0 [0..65] [220..147]
gi|37932559 - gi|37932559|gb|AAP76419.1| RAG1 protein [Callosciurus prevostii]
148.0 [0..65] [220..28]
gi|37932561 - gi|37932561|gb|AAP76420.1| RAG1 protein [Tamiops swinhoei]
147.0 [0..65] [220..152]
gi|37932597 - gi|37932597|gb|AAP76438.1| RAG1 protein [Paraxerus ochraceus]
146.0 [0..65] [220..152]
gi|37932589 - gi|37932589|gb|AAP76434.1| RAG1 protein [Heliosciurus undulatus]
146.0 [0..65] [220..131]
gi|34223825 - gi|34223825|gb|AAQ63081.1| recombination activating gene 1 [Neotoma floridana]
146.0 [0..65] [220..159]
gi|34223821 - gi|34223821|gb|AAQ63079.1| recombination activating gene 1 [Peromyscus leucopus]
145.0 [0..65] [220..145]
gi|37932543 - gi|37932543|gb|AAP76411.1| RAG1 protein [Glaucomys volans]
145.0 [0..65] [220..157]
gi|34223823 - gi|34223823|gb|AAQ63080.1| recombination activating gene 1 [Reithrodontomys fulvescens]
144.0 [0..65] [220..158]

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Predicted Domain #1
Region A:
Residues: [1-102]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAFCCCFQV DLFESYVNPN TSITRNCPCL NCFLQSFMDL YASLFSRGGM HPIPSTVETA  60
   61 TVMNSTTALD DSLSSVYHSP PTPLPYDADP RYFRFVKGSS HS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [103-221]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEESEPLRGD TEMSSEALGD GGAKWSKSDS EDGSKEVYTK GSSTFTKSKT MPGIEVYYAD  60
   61 SDDEDICPTC LDDYTLENPK IITKCSHHFH LSCIYEWMER SETCPVCGKV MAFDENETS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.69897
Match: 1u6gB
Description: Crystal Structure of The Cand1-Cul1-Roc1 Complex
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle