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Protein Overview: AT18H_ARATH

General Information:
Name(s) found: AT18H_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|23297074|gb|AAN13084.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18405032|ref|NP_564664.1| AtATG18h [Arabidopsis thaliana] [NCBI NR]
  • Autophagy-related protein 18h OS=Arabidopsis thaliana GN=ATG18H PE=2 SV=1 [Swiss-Prot]
  • unknown protein [Arabidopsis thaliana]gi|18405032|ref|NP_564664.1| expressed protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • | Symbols: AtATG18h | AtATG18h (Arabidopsis thaliana homolog of yeast autophagy 18 (ATG18) h) | chr1:20420686-20424400 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ATATG18H, ATG18H | homolog of yeast autophagy 18 (ATG18) H | chr1:20417019-20420733 REVERSE LENGTH=927 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 927 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IEA]
    Biological Process: response to starvation [IEP]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSNSKVNIN NNGDNHNQTK NNGTNGFLPN SLKFISTCIR TASSGVRSAS ASVAASLSSD  60
   61 SHELKDQVLW SSFDRLHTSE SSFKNVLLLG YTNGFQVLDI DDSNDVTEFV SRRDDPVTFL 120
  121 QMQPLPAKCD GVEGFRSSHP ILLAVADEAK GSGPIVTSRD GSVRNGYEDP LALSPTVVRF 180
  181 YSLRSHNYVH VLRFRSTVYM VRCSPRIVAV GLGSQIYCFD ALTLENKFSV LSYPVPQLGN 240
  241 QGISGVNVGY GPMAVGARWL AYASNSPLSS SIGRLSPQNV TPPGVSPSTS PNNGNLVARY 300
  301 AMESSKHLAA GLLNLGDKGY KTISKYCQDL KHDGPGPSLS SSPGRKVGRV GSHSAESDVV 360
  361 GTVIVKDFES RAIIAQFRAH TSPISALCFD PSGTLLVTAS IHGNNINVFR IMPTPTKNGP 420
  421 GAQSYDWSSS HVPLYKLHRG MTSAVIQDIC FSSYSQWIAI VSSKSTCHIY VLSPFGGENV 480
  481 LEIRNSQFDG PTLAPTLSLP WWSSPSFMTT HFSYPPPASV TLSVVSRIKC NNFFHAASSV 540
  541 VGKPTFPSGC LAAVFHQSVP QESQSSSPAL DYLLVYTPSG HVVQYKLIPS LGGDQAESNT 600
  601 RNGATSGLTS EEELRVKVEP VQCWDVCRRA DWPEREENIC GLTYGGRKNA ELTVDTSDSE 660
  661 DQTKPLEKHH VYLANAEVLI NSGRKPIWQN SEISFYPMYP PDSDGKNLNS HQGGGETEIG 720
  721 KVSANEVDIR RKDLLPVYDN FHSVYTSMRN RGFSGERDSD SSSSSDPGQV KEMHPFNGMV 780
  781 YPEDEERRGS AHFALTPNQN PHTGIVTFKQ PVVSISSAVK DTDYIDDDAH VLPKNASLPA 840
  841 ETKIENSSGI SGDSNVSSNR SDMSMNAADE GEGPIDGSPN FEQFFEEVVS NETVTETEHK 900
  901 DAPSDGKLDD DEDDDMLGGV FAFSEEG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..564] PSI-BLAST 44.221849 Actin interacting protein 1
    2 View Details [565..687] PSI-BLAST 62.09691 No description for 2ovpB was found.
    3 View Details [688..927] PSI-BLAST 8.0 No description for 2vduB was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle