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Protein Overview: CHR28_ARATH

General Information:
Name(s) found: CHR28_ARATH [Swiss-Prot]
Description(s) found:
Found 11 descriptions.
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  • Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana GN=CHR28 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 981 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: nucleic acid binding [IEA]
    DNA binding [IEA][ISS]
    ATP binding [IEA][ISS]
    zinc ion binding [IEA][ISS]
    protein binding [IEA][ISS]
    helicase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSAIDISSD SDVEIQETRT RPQHPPRIAE GSHRRDLSTL RPHFLSGSSS GANGHTKTGL  60
   61 TNLDSRNGFE SKPLPRAEHH THIPGNGSIV TSRIPNISVG DYEKFSSQQA FKRTHPPTFS 120
  121 RPPFPPRPDI GTSNGNASHF RGGAHDDLGM GRVTNGTRIL PPSVAHGTSA SPSHFNGLSD 180
  181 PMHRNGIGEE RNSENDERLI YQAALQELNQ PKSEVDLPAG LLSVPLMKHQ KIALAWMFQK 240
  241 ETNSLHCMGG ILADDQGLGK TVSTIALILK QMHEAKLKSK NSGNQEAEAL DLDADDESEN 300
  301 AFEKPESKAS NGSGVNGDSG IKKAKGEEAS TSTRKFNRKR PAAGTLIVCP ASVVRQWARE 360
  361 LDEKVTDEAK LSVLIYHGGN RTKDPIELAK YDVVMTTYAI VSNEVPKQPL VDDDENDEKN 420
  421 SEKYGLASGF SINKKRKNVV GTTKKSKKKK GNNNAGDSSD PDSGTLAKVG WFRVVLDEAQ 480
  481 TIKNHRTQVA RACCGLRAKR RWCLSGTPIQ NTIDDLYSYF RFLKYDPYAV YKSFCHQIKG 540
  541 PISRNSLQGY KKLQAVLRAI MLRRTKGTLL DGQPIINLPP KTINLSQVDF SVEERSFYVK 600
  601 LESDSRSQFK AYAAAGTLNQ NYANILLMLL RLRQACDHPQ LVKRYNSDSV GKVSEEAVKK 660
  661 LPKEDLVSLL SRLESSPICC VCHDPPEDPV VTLCGHIFCY QCVSDYITGD EDTCPAPRCR 720
  721 EQLAHDVVFS KSTLRSCVAD DLGCSSSEDN SHDKSVFQNG EFSSSKIKAV LDILQSLSNQ 780
  781 GTSNSTQNGQ MASSSQQPND DDDDDDDDVT IVEKTSLKST PSNGGPIKTI IFSQWTGMLD 840
  841 LVELSLIENS IEFRRLDGTM SLIARDRAVK EFSNDPDVKV MIMSLKAGNL GLNMIAACHV 900
  901 ILLDLWWNPT TEDQAIDRAH RIGQTRPVTV TRITIKNTVE DRILALQEEK RKMVASAFGE 960
  961 DHGGSSATRL TVDDLKYLFM V

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..116] deduced N/A No confident structure predictions are available.
    2 View Details [117..242] PSI-BLAST 4.39794 Tandem chromodomains of human CHD1 complexed with Histone H3 Tail containing trimethyllysine 4 and dimethylarginine 2
    3 View Details [243..861] PSI-BLAST 54.154902 Structure of the SWI2/SNF2 chromatin remodeling domain of eukaryotic Rad54
    4 View Details [862..981] PSI-BLAST 33.69897 Sulfolobus solfataricus SWI2/SNF2 ATPase C-terminal domain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle