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Protein Overview: PR19A_ARATH

General Information:
Name(s) found: PR19A_ARATH [Swiss-Prot]
Description(s) found:
Found 11 descriptions.
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  • Pre-mRNA-processing factor 19 homolog 1 OS=Arabidopsis thaliana GN=PRP19A PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 523 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    nucleolus [IDA]
    CUL4 RING ubiquitin ligase complex [ISS]
    Biological Process: response to cadmium ion [IEP]
    defense response to bacterium [IGI]
    Molecular Function: nucleotide binding [ISS]
    ubiquitin-protein ligase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNCAISGEVP EEPVVSKKSG LLYEKRLIQT HISDYGKCPV TGEPHTLDDI VPIKTGKIVK  60
   61 PKPLHTASIP GLLGTFQTEW DSLMLSNFAL EQQLHTARQE LSHALYQHDA ACRVIARLKK 120
  121 ERDESRQLLA EAERQLPAAP EVATSNAALS NGKRGIDDGE QGPNAKKMRL GISAEVITEL 180
  181 TDCNAALSQQ RKKRQIPKTL ASVDALEKFT QLSSHPLHKT NKPGIFSMDI LHSKDVIATG 240
  241 GIDTTAVLFD RPSGQILSTL TGHSKKVTSI KFVGDTDLVL TASSDKTVRI WGCSEDGNYT 300
  301 SRHTLKDHSA EVRAVTVHAT NKYFVSASLD STWCFYDLSS GLCLAQVTDA SENDVNYTAA 360
  361 AFHPDGLILG TGTAQSIVKI WDVKSQANVA KFGGHNGEIT SISFSENGYF LATAALDGVR 420
  421 LWDLRKLKNF RTFDFPDANS VEFDHSGSYL GIAASDIRVF QAASVKAEWN PIKTLPDLSG 480
  481 TGKATSVKFG LDSKYIAVGS MDRNLRIFGL PDDDNTEDSA QDS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..132] PSI-BLAST 74.30103 PAF-AH Holoenzyme: Lis1/Alfa2
    2 View Details [133..211] deduced N/A No confident structure predictions are available.
    3 View Details [212..425] PSI-BLAST 29.69897 Crystal Structure of Murine Coronin-1
    4 View Details [426..523] PSI-BLAST 74.0 No description for 2gnqA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle