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Protein Overview: TFB4_ARATH

General Information:
Name(s) found: TFB4_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|92856638|gb|ABE77412.1| At1g18340 [Arabidopsis thaliana] [NCBI NR]
  • gi|21537277|gb|AAM61618.1| unknown [Arabidopsis thaliana] [NCBI NR]
  • gi|18394597|ref|NP_564050.1| basal transcription factor complex subunit-related [Arabidopsis thaliana] [NCBI NR]
  • RNA polymerase II transcription factor B subunit 4 OS=Arabidopsis thaliana GN=TFB4 PE=2 SV=1 [Swiss-Prot]
  • unknown [Arabidopsis thaliana]gi|18394597|ref|NP_564050.1| basal transcription factor complex subunit-related [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Basal transcription factor complex subunit-related [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | basal transcription factor complex subunit-related | chr1:6311605-6313727 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At1g18340 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | basal transcription factor complex subunit-related | chr1:6311612-6313734 REVERSE LENGTH=301 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At1g18340 OS=Arabidopsis thaliana GN=At1g18340 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 301 amino acids

    Gene Ontology:
    Cellular Component: core TFIIH complex [IEA]
    Biological Process: DNA repair [IEA]
    regulation of transcription, DNA-dependent [IEA]
    Molecular Function: general RNA polymerase II transcription factor activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAIASKQYS DDVSLLVLLL DTNPLFWSTT SITFSQFLSH VLAFLNAVLG LNQLNQVVVI  60
   61 ATGYSSCDYI YDSSLTSNHG NFESNGTGMP AIFGSLLKKL EEFVTKDEEL SKEEVSEDRI 120
  121 PSCLLSGSLS MALCYIQRVF RSGHLHPQPR ILCLQGSPDG PEQYVAVMNS IFSAQRLMVP 180
  181 IDSCYIGVQN SAFLQQASYI TGGVHHTPKQ LDGLFQYLTT IFATDLHSRG FVQLPKPIGV 240
  241 DFRASCFCHK KTIDMGYICS VCLSIFCEHH KKCSTCGSVF GQSKLDDASS ASDKKRKAPS 300
  301 T

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..301] FFAS03 0.951 Structural basis for allostery in integrins and binding of ligand-mimetic therapeutics to the platelet receptor for fibrinogen

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.68315152218267 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.10023916482665 bayes_pls_golite062009
  • DNA binding
    		•  1.9295508897092 bayes_pls_golite062009
  • protein binding
    		•  1.42792331963866 bayes_pls_golite062009
  • hydrolase activity
    		•  0.589248272940562 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.446181458443121 bayes_pls_golite062009
  • protein complex binding
    		•  0.0576912134524816 bayes_pls_golite062009
  • catalytic activity
    		•  0.0380261580236634 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.61

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle