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Protein Overview: gi|17979390, gi|...

General Information:
Name(s) found: gi|22328952 [NCBI NR]
gi|22136852 [NCBI NR]
gi|17979390 [NCBI NR]
Description(s) found:
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  • gi|22328952|ref|NP_194390.2| nucleolar protein, putative [Arabidopsis thaliana] [NCBI NR]
  • gi|22136852|gb|AAM91770.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|17979390|gb|AAL49920.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • unknown protein [Arabidopsis thaliana]gi|17979390|gb|AAL49920.1| unknown protein [Arabidopsis thaliana]gi|22328952|ref|NP_194390.2| nucleolar protein, putative [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Nucleolar protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | nucleolar protein, putative | chr4:13419635-13423424 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:13419629-13423418 FORWARD LENGTH=671 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Putative uncharacterized protein At4g26600 OS=Arabidopsis thaliana GN=At4g26600 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 671 amino acids

    Gene Ontology:
    Cellular Component: nucleolus [IDA][ISS]
    Biological Process: rRNA processing [IEA]
    Molecular Function: RNA binding [IEA]
    S-adenosylmethionine-dependent methyltransferase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALTRNKKK GSNSQTPPLN KQTKASPLKK AAKTQKPPLK KQRKCISEKK PLKKPEVSTD  60
   61 EEEEEEENEQ SDEGSESGSD LFSDGDEEGN NDSDDDDDDD DDDDDDDEDA EPLAEDFLDG 120
  121 SDNEEVTMGS DLDSDSGGSK LERKSRAIDR KRKKEVQDAD DEFKMNIKEK PDEFQLPTQK 180
  181 ELEEEARRPP DLPSLQMRIR EIVRILSNFK DLKPKGDKHE RNDYVGQLKA DLSSYYGYNE 240
  241 FLIGTLIEMF PVVELMELIE AFEKKRPTSI RTNTLKTRRR DLADILLNRG VNLDPLSKWS 300
  301 KVGLIVYDSQ VPIGATPEYL AGFYMLQSAS SFLPVMALAP REKERVVDMA AAPGGKTTYV 360
  361 AALMKNTGII YANEMKVPRL KSLSANLHRM GVTNTIVCNY DGRELTKVLG QSSVDRVLLD 420
  421 APCSGTGVIS KDESVKTSKS ADDIKKFAHL QKQLILGAID LVDANSKTGG YIVYSTCSVM 480
  481 IPENEAVIDY ALKNRDVKLV PCGLDFGRPG FSSFREHRFH PSLEKTRRFY PHVHNMDGFF 540
  541 VAKLKKMSNA MQPSGNDEPA VTMEQAQVSS SDDDDEKAEA IEELEKPPVA SGQPKRESNT 600
  601 KEDTNKRKNP RSKEIHKGKR NKNTKTESGN VEEPRKQKKK RSQWKNEIAQ AREEKRKTMR 660
  661 ENAKETPKHR G

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..102] FFAS03 0.954 Ribosomal protein L10
    2 View Details [103..237] PSI-BLAST 5.30103 Antitermination factor NusB
    3 View Details [238..548] PSI-BLAST 81.0 Crystal Structure Analysis of Methyltransferase Homolog Protein from Pyrococcus Horikoshii
    4 View Details [549..671] FFAS03 1.5 No description for 2j63A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • transcription regulator activity
    		•  0.271556861799499 bayes_pls_golite062009
    3
    Term Confidence Notes
  • catalytic activity
    		•  0.857347609112816 bayes_pls_golite062009
  • transferase activity
    		•  0.769739415230943 bayes_pls_golite062009
  • transferase activity, transferring one-carbon groups
    		•  0.648175251543522 bayes_pls_golite062009
  • methyltransferase activity
    		•  0.646052703874729 bayes_pls_golite062009
  • S-adenosylmethionine-dependent methyltransferase activity
    		•  0.00827854656426392 bayes_pls_golite062009
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle