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Protein Overview: SEC6_ARATH

General Information:
Name(s) found: SEC6_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|22136818|gb|AAM91753.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18409922|ref|NP_565026.1| SEC6 [Arabidopsis thaliana] [NCBI NR]
  • gi|15028129|gb|AAK76688.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • Exocyst complex component SEC6 OS=Arabidopsis thaliana GN=SEC6 PE=1 SV=1 [Swiss-Prot]
  • unknown protein [Arabidopsis thaliana]gi|15028129|gb|AAK76688.1| unknown protein [Arabidopsis thaliana]gi|18409922|ref|NP_565026.1| expressed protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | similar to hypothetical protein OsI_008770 [Oryza sativa (indica cultivar-group)] (GB:EAY87537.1); similar to exocyst complex subunit SEC6 [Carica papaya] (GB:ABS32232.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67837.1); [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | similar to hypothetical protein OsI_008770 [Oryza sativa (indica cultivar-group)] (GB:EAY87537.1); similar to exocyst complex subunit SEC6 [Carica papaya] (GB:ABS32232.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67837.1); contains InterPro domain Exocyst complex component Sec6 (InterPro:IPR010326) | chr1:27013684-27020407 FORWARD [TAIR_A_Thaliana_na_04-12-2008_reversed.fasta]
  • | Symbols: SEC6 | SEC6 | chr1:27010022-27016745 FORWARD LENGTH=752 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Protein SEC6 OS=Arabidopsis thaliana GN=SEC6 PE=1 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 752 amino acids

    Gene Ontology:
    Cellular Component: cytosol [IDA]
    plasma membrane [IDA]
    exocyst [IDA]
    Biological Process: pollen tube growth [IGI]
    pollen germination [IGI]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMVEDLGVEA KEAAVREVAK LLPLPELLQS ISSIKADYIA RQQANDAQLS TMVAEQVEQA  60
   61 QAGLESLSSS EKTIYELRDN FISIDKLCQE CQTLIDNHDQ IKLLSNARNN LNKTLKDVEG 120
  121 MMSISVEAAA ARDSLSDDKE IVNTYERLTA LDGKRRFALA AAGEEVGRLR EYFEDVDRTW 180
  181 ETFEKTLWGH VSNYYKLSKE SPQTLVRALR VVEMQEILDQ QLAEEAAEAE GEGAMASVAN 240
  241 PRRPGKKSTT TSASSKGLAQ QKLKVQGKGY KDKCYEQIRK AVEDRFNRLL TLVFEDLKAA 300
  301 LEEARMIGEE LGDIYDYVAP CFPPRYEIFQ LMVNLYTERF IQMLRLLSDR ANDLTNIEIL 360
  361 KVTGWVVEYQ ENLIALGVDD SLAQVCSESG SMDPLMNAYV ERMQATTKKW YMNILEADKV 420
  421 QPPKKTEEGK LYTPAAVDLF RILGEQVQIV RDNSTDVMLY RIALAIIQVM IDFQAAEKKR 480
  481 VDEPASDIGL EPLCAMINNN LRCYDLAMEL SNSTLEALPQ NYAEQVNFED TCKGFLEVAK 540
  541 EAVHQTVRVI FEDPGVQELL VKLYQKEWCE GQVTEYLVAT FGDYFTDVKM YVEERSFRRF 600
  601 VEACLEETVV VYVDHLLTQK NYIKEETIER MRLDEEVLMD FFREYISASK VESRIRIMSD 660
  661 LRELASAESL DAFTLVYSNI LEHQPDCPAE VVEKLVSLRE GIPRKDTKEV VQECKEIYEN 720
  721 TLVDGNPPKT GFVFPRVKCL TASKGSMWRK LT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..318] PSI-BLAST 18.30103 Heavy meromyosin subfragment
    2 View Details [319..752] PSI-BLAST 67.522879 No description for 2fji1 was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle