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Protein Overview: RT11_ARATH

General Information:
Name(s) found: RT11_ARATH [Swiss-Prot]
Description(s) found:
Found 11 descriptions.
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  • Probable ribosomal protein S11, mitochondrial OS=Arabidopsis thaliana GN=NFD3 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 314 amino acids

    Gene Ontology:
    Cellular Component: cytosolic small ribosomal subunit [ISS]
    ribosome [IEA]
    intracellular [IEA]
    Biological Process: translation [IEA][ISS]
    Molecular Function: structural constituent of ribosome [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGVSRHLRA SSLLSLIRSY GGINSVCRFS SQSDGFSGGR FREQVPVSGE SANNSGLSNT  60
   61 GRIGSSPEPN PSTLRTFGDM KAGLLNRGVN GFSAPNAPPT FKSSLRSRLP NSLPDQFGQT 120
  121 NPGLPNTGGS GFSAPSLSSY ENFTQSSSLL KENSRSGGKS SDLDFVREVI EDEGRRTAGI 180
  181 FSHFQRPNLE TNADIIHIKM LRNNTFVTVT DSKGNVKCKA TSGSLPDLKG GRKMTNYTAD 240
  241 ATAENIGRRA KAMGLKSVVV KVNGFTHFGK KKKAIIAFRD GFTNSRSDQN PIVYIEDTTR 300
  301 KAHNGCRLPR KRRV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..173] deduced N/A No confident structure predictions are available.
    2 View Details [174..314] PSI-BLAST 40.0 No description for 1vs5K was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • structural constituent of ribosome
    		•  9.83351366956976 bayes_pls_golite062009
  • structural molecule activity
    		•  9.25292687983044 bayes_pls_golite062009
  • RNA binding
    		•  1.52264031918826 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.903597805385443 bayes_pls_golite062009
  • binding
    		•  0.558121720172199 bayes_pls_golite062009
  • rRNA binding
    		•  0.357032493028 bayes_pls_golite062009
  • catalytic activity
    		•  0.249767694451989 bayes_pls_golite062009
  • translation regulator activity
    		•  0.17520676474539 bayes_pls_golite062009
  • protein binding
    		•  0.013467373576568 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle