| Protein: | RT11_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 314 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RT11_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
273.0 | [0..80] | [314..1] |
|
Region A: Residues: [1-173] |
1 11 21 31 41 51
| | | | | |
1 MNGVSRHLRA SSLLSLIRSY GGINSVCRFS SQSDGFSGGR FREQVPVSGE SANNSGLSNT 60
61 GRIGSSPEPN PSTLRTFGDM KAGLLNRGVN GFSAPNAPPT FKSSLRSRLP NSLPDQFGQT 120
121 NPGLPNTGGS GFSAPSLSSY ENFTQSSSLL KENSRSGGKS SDLDFVREVI EDE
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [174-314] |
1 11 21 31 41 51
| | | | | |
1 GRRTAGIFSH FQRPNLETNA DIIHIKMLRN NTFVTVTDSK GNVKCKATSG SLPDLKGGRK 60
61 MTNYTADATA ENIGRRAKAM GLKSVVVKVN GFTHFGKKKK AIIAFRDGFT NSRSDQNPIV 120
121 YIEDTTRKAH NGCRLPRKRR V
|
| Detection Method: | |
| Confidence: | 40.0 |
| Match: | 1vs5K |
| Description: | No description for 1vs5K was found. |
| Term | Confidence | Notes |
| structural constituent of ribosome | 9.83351366956976 | bayes_pls_golite062009 |
| structural molecule activity | 9.25292687983044 | bayes_pls_golite062009 |
| RNA binding | 1.52264031918826 | bayes_pls_golite062009 |
| nucleic acid binding | 0.903597805385443 | bayes_pls_golite062009 |
| binding | 0.558121720172199 | bayes_pls_golite062009 |
| rRNA binding | 0.357032493028 | bayes_pls_golite062009 |
| catalytic activity | 0.249767694451989 | bayes_pls_golite062009 |
| translation regulator activity | 0.17520676474539 | bayes_pls_golite062009 |
| protein binding | 0.013467373576568 | bayes_pls_golite062009 |
