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Protein Overview: SYFM_ARATH

General Information:
Name(s) found: SYFM_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|18410886|ref|NP_567061.1| phenylalanyl-tRNA synthetase class IIc family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|17104697|gb|AAL34237.1| putative phenylalanine-tRNA synthetase [Arabidopsis thaliana] [NCBI NR]
  • gi|13877969|gb|AAK44062.1|AF370247_1 putative phenylalanine-tRNA synthetase [Arabidopsis thaliana] [NCBI NR]
  • Phenylalanine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=At3g58140 PE=1 SV=1 [Swiss-Prot]
  • putative phenylalanine-tRNA synthetase [Arabidopsis thaliana]gi|13877969|gb|AAK44062.1| putative phenylalanine-tRNA synthetase [Arabidopsis thaliana]gi|18410886|ref|NP_567061.1| phenylalanyl-tRNA synthetase class IIc family protein [Arabidopsis thaliana [nrdb_11152004_Chlamydomonas]
  • | Symbols: | phenylalanyl-tRNA synthetase class IIc family protein | chr3:21540965-21543363 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative phenylalanine-tRNA synthetase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ATP binding / phenylalanine-tRNA ligase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | phenylalanyl-tRNA synthetase class IIc family protein | chr3:21529988-21532386 REVERSE LENGTH=429 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 429 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    membrane [IDA]
    mitochondrion [IDA]
    Biological Process: tRNA aminoacylation for protein translation [IEA]
    tRNA processing [IEA]
    phenylalanyl-tRNA aminoacylation [IEA][ISS]
    translation [IEA]
    Molecular Function: magnesium ion binding [IEA]
    nucleotide binding [IEA]
    ATP binding [IEA][ISS]
    aminoacyl-tRNA ligase activity [IEA]
    phenylalanine-tRNA ligase activity [IEA][ISS]
    tRNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVFSVQSTI FSRASVALLS SNGFKRFSFV SSFSSSAAYS PPKMRKRRYP IVSAVDIGGV  60
   61 AIARNDVVRE DDPTNNVPDS IFSKLGMQLH RRDKHPIGIL KNAIYDYFDS NYSNKFEKFE 120
  121 DLSPIVTTKQ NFDDVLVPAD HVSRSLNDTY YVDSQTVLRC HTSAHQAELL RKGHSRFLVT 180
  181 GDVYRRDSID STHYPVFHQM EGFCVFSPED WNGSGKDSTL YAAEDLKKCL EGLARHLFGS 240
  241 VEMRWVDTYF PFTNPSFELE IYFKEDWLEV LGCGVTEQVI LKQSGLENNV AWAFGLGLER 300
  301 LAMVLFDIPD IRFFWSSDER FTSQFGKGEL GVKFKPYSKY PPCYKDISFW ISDLFTENNF 360
  361 CEVVRGIAGD LVEEVKLIDQ FTNKKKGLTS HCYRIVFRSM ERSLTDEEVN DLQSKVRDEV 420
  421 QKKLNVELR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..325] PSI-BLAST 55.39794 Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS
    2 View Details [326..429] PSI-BLAST 4.69897 Prolyl-tRNA synthetase (ProRS) domain; C-terminal domain of ProRS; Prolyl-tRNA synthetase (ProRS)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  7.89468709683036 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  7.89468709683036 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  7.88410036819636 bayes_pls_golite062009
  • phenylalanine-tRNA ligase activity
    		•  7.1807508219467 bayes_pls_golite062009
  • ligase activity
    		•  6.92073480193262 bayes_pls_golite062009
  • serine-tRNA ligase activity
    		•  2.46505535069103 bayes_pls_golite062009
  • glycine-tRNA ligase activity
    		•  2.29229136935761 bayes_pls_golite062009
  • threonine-tRNA ligase activity
    		•  2.18642354927 bayes_pls_golite062009
  • catalytic activity
    		•  1.99372273395202 bayes_pls_golite062009
  • alanine-tRNA ligase activity
    		•  1.82594054955281 bayes_pls_golite062009
  • lysine-tRNA ligase activity
    		•  1.72324031407565 bayes_pls_golite062009
  • histidine-tRNA ligase activity
    		•  1.72215103383322 bayes_pls_golite062009
  • binding
    		•  0.966824335333342 bayes_pls_golite062009
  • asparagine-tRNA ligase activity
    		•  0.921492123574877 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.375542987753806 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.281662799812287 bayes_pls_golite062009
  • protein binding
    		•  0.0804954454681041 bayes_pls_golite062009
  • DNA binding
    		•  0.0309732052586011 bayes_pls_golite062009
  • RNA binding
    		•  0.0221706730298825 bayes_pls_golite062009
  • aspartate-tRNA ligase activity
    		•  0.00572514744734753 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.46

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle