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Protein Overview: KIN13_ARATH

General Information:
Name(s) found: KIN13_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|30684173|ref|NP_850598.1| KINESIN-13A; ATP binding / microtubule motor [Arabidopsis thaliana] [NCBI NR]
  • gi|15810129|gb|AAL07208.1| putative kinesin protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15228274|ref|NP_188285.1| KINESIN-13A; ATP binding / microtubule motor [Arabidopsis thaliana] [NCBI NR]
  • gi|110741480|dbj|BAE98696.1| kinesin like protein [Arabidopsis thaliana] [NCBI NR]
  • Kinesin-13A OS=Arabidopsis thaliana GN=KINESIN-13A PE=1 SV=1 [Swiss-Prot]
  • putative kinesin protein [Arabidopsis thaliana]gi|30684173|ref|NP_850598.1| kinesin motor family protein [Arabidopsis thaliana]gi|15228274|ref|NP_188285.1| kinesin motor family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • | Symbols: ATKINESIN-13A, KINESIN-13A | ATKINESIN-13A/KINESIN-13A; microtubule motor | chr3:5662666-5667267 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • ATP binding / microtubule motor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • kinesin like protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative kinesin protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ATKINESIN-13A, KINESIN-13A | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:5662660-5667261 REVERSE LENGTH=794 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Kinesin family member 2/24 OS=Arabidopsis thaliana GN=KINESIN-13A PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 794 amino acids

    Gene Ontology:
    Cellular Component: Golgi stack [IDA]
    plasma membrane [IDA]
    Biological Process: trichome morphogenesis [IMP]
    Molecular Function: ATP binding [IEA]
    microtubule motor activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGQMQQNNA AAATALYDGA LPTNDAGDAV MARWLQSAGL QHLASPVAST GNDQRHLPNL  60
   61 LMQGYGAQTA EEKQRLFQLM RNLNFNGEST SESYTPTAHT SAAMPSSEGF FSPEFRGDFG 120
  121 AGLLDLHAMD DTELLSEHVI TEPFEPSPFM PSVNKEFEED YNLAANRQQR QQTEAEPLGL 180
  181 LPKSDKENNS VAKIKVVVRK RPLNKKETAK KEEDVVTVSD NSLTVHEPRV KVDLTAYVEK 240
  241 HEFCFDAVLD EDVSNDEVYR ATIEPIIPII FQRTKATCFA YGQTGSGKTF TMKPLPIRAV 300
  301 EDLMRLLRQP VYSNQRFKLW LSYFEIYGGK LFDLLSERKK LCMREDGRQQ VCIVGLQEYE 360
  361 VSDVQIVKDF IEKGNAERST GSTGANEESS RSHAILQLVV KKHVEVKDTR RRNNDSNELP 420
  421 GKVVGKISFI DLAGSERGAD TTDNDRQTRI EGAEINKSLL ALKECIRALD NDQLHIPFRG 480
  481 SKLTEVLRDS FVGNSRTVMI SCISPNAGSC EHTLNTLRYA DRVKSLSKSG NSKKDQTANS 540
  541 MPPVNKDPLL GPNDVEDVFE PPQEVNVPET RRRVVEKDSN SSTSGIDFRQ PTNYREESGI 600
  601 PSFSMDKGRS EPNSSFAGST SQRNNISSYP QETSDREEKV KKVSPPRGKG LREEKPDRPQ 660
  661 NWSKRDVSSS DIPTLTNFRQ NASETASRQY ETASRQYETD PSLDENLDAL LEEEEALIAA 720
  721 HRKEIEDTME IVREEMKLLA EVDQPGSMIE NYVTQLSFVL SRKAAGLVSL QARLARFQHR 780
  781 LKEQEILSRK RVPR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..115] FFAS03 1.01 Crystal Structure of the native Shank SAM domain.
    2 View Details [116..525] PSI-BLAST 72.221849 No description for 2gryA was found.
    3 View Details [526..794] PSI-BLAST 11.154902 Heavy meromyosin subfragment

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  3.19486995724826 bayes_pls_golite062009
  • protein binding
    		•  3.01479451996893 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.4352733243042 bayes_pls_golite062009
  • chromatin binding
    		•  1.40125726306854 bayes_pls_golite062009
  • DNA binding
    		•  0.995851697740616 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.897498965407176 bayes_pls_golite062009
  • transcription factor activity
    		•  0.642910879091782 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle