YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|253690290, gi...

General Information:
Name(s) found: gi|253690290 [NCBI NR]
gi|251756868 [NCBI NR]
Description(s) found:
Found 2 descriptions.
SHOW ALL
  • gi|253690290|ref|YP_003019480.1| transcriptional regulator, DeoR family [Pectobacterium carotovorum subsp. carotovorum PC1] [NCBI NR]
  • gi|251756868|gb|ACT14944.1| transcriptional regulator, DeoR family [Pectobacterium carotovorum subsp. carotovorum PC1] [NCBI NR]
    • Organism: Pectobacterium carotovorum subsp. carotovorum PC1
    Length: 252 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQTQRHDAI IELVRRQGYV STEELVDHFA VSPQTIRRDL NDLAEQNKIH RHHGGAALPS  60
   61 SSVNTAYHDR KMMWSDEKAR IARRVASQIP DGATLFIDIG TTPEAVAYAL MQHKDLRVVT 120
  121 NNLNVATLLT AKEDFRLILA GGEVRTRDGG IMGEATLDFI SQFRLDFGIL GISGIDMDGS 180
  181 LLEFDYHEVR TKRAIIENSR CVMLVTDHSK FGRNAMVNLG NMDLIDYLFT DQSPPPSVLK 240
  241 IIEQHKVQLE LC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..88] PSI-BLAST 3.39794 LprA
    2 View Details [89..252] PSI-BLAST 18.09691 No description for 2pjmA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  3.98990675336286 bayes_pls_golite062009
  • DNA binding
    		•  3.4273272886116 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.38054693035398 bayes_pls_golite062009
  • transcription factor activity
    		•  2.80110428028438 bayes_pls_golite062009
  • binding
    		•  2.18911933843505 bayes_pls_golite062009
  • transcription activator activity
    		•  0.53294679084865 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.53285802828572 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.513853050429619 bayes_pls_golite062009
  • protein binding
    		•  0.035220363090062 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle