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Protein Overview: LRP1A_ARATH

General Information:
Name(s) found: LRP1A_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|29294066|gb|AAO73903.1| proline-rich protein family [Arabidopsis thaliana] [NCBI NR]
  • gi|22655032|gb|AAM98107.1| At5g21160/T10F18_190 [Arabidopsis thaliana] [NCBI NR]
  • gi|18420415|ref|NP_568409.1| La domain-containing protein / proline-rich family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15450527|gb|AAK96556.1| AT5g21160/T10F18_190 [Arabidopsis thaliana] [NCBI NR]
  • La-related protein 1A OS=Arabidopsis thaliana GN=LARP1A PE=1 SV=1 [Swiss-Prot]
  • At5g21160/T10F18_190 [Arabidopsis thaliana]gi|29294066|gb|AAO73903.1| proline-rich protein family [Arabidopsis thaliana]gi|15450527|gb|AAK96556.1| AT5g21160/T10F18_190 [Arabidopsis thaliana]gi|18420415|ref|NP_568409.1| La domain-containing protein / pr [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 La domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | La domain-containing protein / proline-rich family protein | chr5:7199194-7203882 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • AT5g21160/T10F18_190 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At5g21160/T10F18_190 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • proline-rich protein family [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • La domain-containing protein / proline-rich family protein [Arabidopsis thaliana] [NCBI-RefSeq_Human_na_04-23-2010_reversed.fasta]
  • | Symbols: | LA RNA-binding protein | chr5:7199191-7203879 REVERSE LENGTH=826 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • AT5g21160/T10F18_190 OS=Arabidopsis thaliana GN=At5g21160 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 826 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    cytosol [IDA]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMAETEGSVA DDRELITREG GIGTKSPWKT TTSPVETIDA PVMGAHSWPA LADAAQQPRP  60
   61 KNPPAPAPAP PSKNIPTSIP IPTPAVTGQA KSKGGGKANP GHKNPSGRHS KPGPRSNQNG 120
  121 PPPPPYLVHA VPYHPPPFPP MVPLPHAAGP DFPYAPYPPY PVPVPPVTES GNEKQVQASP 180
  181 LPPVLPAPQG DPGKPWPHQR GFDPRNMPQG AGPRNFGRPP FMGPAPGFLV GPGPGFPGPV 240
  241 YYLPGPPPGA IRGPYPPRFA PYPVNQGPPI LSPEKLDLRD RVLKQVEYYF SDENLENDHY 300
  301 LISLMDEEGW VPTKIIAGFK RVKAMTMDVD FIVYALGFSN SVEVQGDQIR KRDKWSDWIP 360
  361 ASKKSTSAET IGDGDKDSPK SITSGDNFGN PSKGSSKPTV SDFSSEGAQS SRTNNYKSGN 420
  421 LKSSADEKRN VEDLSNDFSN TFLLDEELDL EHRSPRKSGL SMSKSIEYED DDMAVDDQDI 480
  481 QKLVIVTQNS GKSDGAGIGG TEAKNIPKEL ASTINDGLYY FEQELKKKRS GRRKNNSHLD 540
  541 TKDGKIKSGE GLNTKLGENS AANDGGEEHG IITSRRKQNK GTHKHHTAHA RRFFSSNIRN 600
  601 NGNISESPPS SSIGFFFGST PPDSHGPRLS KLSSSPQCTL SGSSPPVGSL PKSFPPFQHP 660
  661 SHQLLEENGF KQEKYLKYRK RCLNERKKLG SGCSEEMNHL YRFWSYFLRD TFVLSMYDDF 720
  721 QKFALEDAAG NYDYGLECLF RFYSYGLEKH FDEDLYKDFE KLSLDFYHKG NLYGLEKYWA 780
  781 FHHYRGKEEP ITKHPELEKL LKEEFRSIDD FRAKETITNQ KENKSH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..656] PSI-BLAST 23.0 No description for 1y0fB was found.
    2 View Details [657..826] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle