YRC Public Data Repository - Protein Structure Prediction

Protein:	LRP1A_ARATH
Organism:	Arabidopsis thaliana
Length:	826 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LRP1A_ARATH.

Description	E-value	Query Range	Subject Range
gi\|50755001 - gi\|50755001\|ref\|XP_414577.1\| PREDICTED: similar to KIAA0731 protein [Gallus gallus]	491.0	[0..60]	[826..661]
gi\|109079490 - gi\|109079490\|ref\|XP_001112018.1\| PREDICTED: similar to la related protein isoform 1 isoform 2 [Macac...	461.0	[0..93]	[826..9]
gi\|52545644 - gi\|52545644\|emb\|CAH56379.1\| hypothetical protein [Homo sapiens]	442.0	[0..77]	[826..2]
gi\|148233259, gi... - gi\|68534580\|gb\|AAH98998.1\| MGC115226 protein [Xenopus laevis], gi\|148233259\|ref\|NP_001089579.1\| hypo...	438.0	[0..257]	[823..233]
gi\|73984077 - gi\|73984077\|ref\|XP_533293.2\| PREDICTED: similar to La ribonucleoprotein domain family member 2 isofo...	431.0	[0..111]	[826..54]
gi\|58378863, gi\|... - gi\|58378863\|ref\|XP_309080.2\| ENSANGP00000019588 [Anopheles gambiae str. PEST], gi\|55245142\|gb\|EAA048...	424.0	[0..348]	[820..303]
gi\|76623640 - gi\|76623640\|ref\|XP_582017.2\| PREDICTED: similar to la related protein [Bos taurus]	419.0	[0..56]	[826..44]

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Predicted Domain #1

Region A:
Residues: [1-656]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMAETEGSVA DDRELITREG GIGTKSPWKT TTSPVETIDA PVMGAHSWPA LADAAQQPRP  60
   61 KNPPAPAPAP PSKNIPTSIP IPTPAVTGQA KSKGGGKANP GHKNPSGRHS KPGPRSNQNG 120
  121 PPPPPYLVHA VPYHPPPFPP MVPLPHAAGP DFPYAPYPPY PVPVPPVTES GNEKQVQASP 180
  181 LPPVLPAPQG DPGKPWPHQR GFDPRNMPQG AGPRNFGRPP FMGPAPGFLV GPGPGFPGPV 240
  241 YYLPGPPPGA IRGPYPPRFA PYPVNQGPPI LSPEKLDLRD RVLKQVEYYF SDENLENDHY 300
  301 LISLMDEEGW VPTKIIAGFK RVKAMTMDVD FIVYALGFSN SVEVQGDQIR KRDKWSDWIP 360
  361 ASKKSTSAET IGDGDKDSPK SITSGDNFGN PSKGSSKPTV SDFSSEGAQS SRTNNYKSGN 420
  421 LKSSADEKRN VEDLSNDFSN TFLLDEELDL EHRSPRKSGL SMSKSIEYED DDMAVDDQDI 480
  481 QKLVIVTQNS GKSDGAGIGG TEAKNIPKEL ASTINDGLYY FEQELKKKRS GRRKNNSHLD 540
  541 TKDGKIKSGE GLNTKLGENS AANDGGEEHG IITSRRKQNK GTHKHHTAHA RRFFSSNIRN 600
  601 NGNISESPPS SSIGFFFGST PPDSHGPRLS KLSSSPQCTL SGSSPPVGSL PKSFPP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.0
Match:	1y0fB
Description:	No description for 1y0fB was found.

Predicted Domain #2

Region A:
Residues: [657-826]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FQHPSHQLLE ENGFKQEKYL KYRKRCLNER KKLGSGCSEE MNHLYRFWSY FLRDTFVLSM  60
   61 YDDFQKFALE DAAGNYDYGL ECLFRFYSYG LEKHFDEDLY KDFEKLSLDF YHKGNLYGLE 120
  121 KYWAFHHYRG KEEPITKHPE LEKLLKEEFR SIDDFRAKET ITNQKENKSH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits