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Protein Overview: VCL1_ARATH

General Information:
Name(s) found: VCL1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|22655028|gb|AAM98105.1| At2g38020/T8P21.7 [Arabidopsis thaliana] [NCBI NR]
  • gi|18404619|ref|NP_565879.1| VCL1 (VACUOLELESS 1) [Arabidopsis thaliana] [NCBI NR]
  • gi|15081711|gb|AAK82510.1| At2g38020/T8P21.7 [Arabidopsis thaliana] [NCBI NR]
  • gi|13877133|gb|AAK43713.1|AF359240_1 VCL1 [Arabidopsis thaliana] [NCBI NR]
  • Protein VACUOLELESS1 OS=Arabidopsis thaliana GN=VCL1 PE=1 SV=1 [Swiss-Prot]
  • At2g38020/T8P21.7 [Arabidopsis thaliana]gi|13877133|gb|AAK43713.1| VCL1 [Arabidopsis thaliana]gi|15081711|gb|AAK82510.1| At2g38020/T8P21.7 [Arabidopsis thaliana]gi|18404619|ref|NP_565879.1| vacuoleless1 (VCL1) [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Vacuoleless1 (VCL1) [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: MAN, VCL1 | VCL1 (VACUOLELESS 1) | chr2:15917176-15921268 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At2g38020/T8P21.7 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • VCL1 (VACUOLELESS 1) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • VCL1 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: VCL1, MAN, EMB258 | vacuoleless1 (VCL1) | chr2:15910098-15914190 REVERSE LENGTH=858 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At2g38020/T8P21.7 OS=Arabidopsis thaliana GN=VCL1 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 858 amino acids

    Gene Ontology:
    Cellular Component: plant-type vacuole membrane [IDA]
    Biological Process: vacuole organization [TAS]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANVSVAAEW QLLYDRYYRK PEIYQMKWKH VDLSRNKVAC ASFGGPIAVI RDDSKIVQLY  60
   61 AESALRKLRI FNSAGILLSE TVWKHPGGRL IGMSWSDDQT LICIVQDGTI YRYNIHAELI 120
  121 EPNMSMGQEC FEQNVVECVF WGNGVVCLTE GGQLICIFDF KTMKPSKLPD VPGLAEDDLL 180
  181 QPICLTVREP KYTMSGIAEV LVAVGDDIFV VEEDMVQTIR FDEPSVDDSE MQNDDSGNLI 240
  241 GVVQKMIVSP NGKFLTLFTH DGRIVVVDME TKQIAIDYSC ESALPPQQMA WCGMDSVLLY 300
  301 WDEDLMMVGP VGDPVHYFYD EPIILIPECD GVRILSNTNL EFLQRVPDST ESIFKIGSTS 360
  361 PAALLYDALD HFDRRSAKAD ENLRLIRSSL SEAVESCIDA AGHEFDVTRQ RALLRAASYG 420
  421 QAFCSNFQRE RVQETCRTLR VLNAVRDPAI GIPLSIQQYK LLTPVVLISR LINANCHLLA 480
  481 LRISEYLDMN KEVVIMHWAC AKITASPSTP DSHLLEILLD KLQLCKGISY AAVATHADNC 540
  541 GRRKLAAMLV EHEPRSTKQV PLLLSIGEED TALVKATESG DTDLVYLVIF HIWQKRPPLE 600
  601 FFAMIQGRVL ARDLFVAYAR CHKHEFLKDF FLSTGQIHEV AFLLWKESWD MGKNPMASKG 660
  661 SPLHGPRIKL IEKARNLFSQ TKEHTFESKA AEEHAKLLKI QHELEASTKQ AIFVDSSIND 720
  721 TIRTCIVLGN NRAAIKVKTE FKVSDKRWYW LKAFALATIK DWAALEKFSK EKRPPMGFRP 780
  781 FVEACIDADE KAEALKYIPK LSDLVERGEA YARIGMAKEA ADCAAQANDG GELLERFRKT 840
  841 FVQNAIFDTL LMPFQGAS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..85] MSA 1.03499 View MSA. No confident structure predictions are available.
    2 View Details [86..174] deduced N/A No confident structure predictions are available.
    3 View Details [175..358] MSA 1.048988 View MSA. No confident structure predictions are available.
    4 View Details [359..474] deduced N/A No confident structure predictions are available.
    5 View Details [475..504] MSA 1.058995 View MSA. No confident structure predictions are available.
    6 View Details [505..622] MSA 2.070996 View MSA. No confident structure predictions are available.
    7 View Details [623..709] deduced N/A No confident structure predictions are available.
    8 View Details [710..858] MSA 5.066992 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle