YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|229695515, gi...

General Information:
Name(s) found: gi|229839149 [NCBI NR]
gi|229695515 [NCBI NR]
Description(s) found:
Found 2 descriptions.
SHOW ALL
  • gi|229839149|ref|ZP_04459308.1| transcription termination/antitermination L factor [Yersinia pestis biovar Orientalis str. PEXU2] [NCBI NR]
  • gi|229695515|gb|EEO85562.1| transcription termination/antitermination L factor [Yersinia pestis biovar Orientalis str. PEXU2] [NCBI NR]
    • Organism: Yersinia pestis biovar Orientalis str. PEXU2
    Length: 495 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKEILAVVE AVSNEKSLPR EKIFEALETA LATATKKKYE QEIEVRVSID RKTGDFDTFR  60
   61 RWVAVDEVTM PTREITLDAA QFEDPSLQLG DYVEDQIESV TFDRITTQTA KQVIVQKVRE 120
  121 AERAMVVEQF RQYLGQIVTG IVKKVSRDSI ALDLGHNAEA VIGREDMLPR ENFRPGDRIR 180
  181 GVLYDVRPEA RGAQLFVSRS RSEMLVELFR IEVPEIGEEL IEIKAAARDP GSRAKIAVKT 240
  241 NDKRIDPVGA CVGMRGARVQ AVSSELGGER IDIVLWDDNP AQFVINAMAP ADVASIVVDE 300
  301 DKHTMDVAVE ASNLAQAIGR NGQNVRLAAQ LSGWELNVMT ADDLQAKHQA EAHAAIDTFT 360
  361 KYLDIDEDFA TVLVEEGFSS LEELAYVPMK ELLEIDGLDE DTVEALRDRA KAALTTLALA 420
  421 QEESFGDQKP ADDLLNLAGL ERSMAFKLAA RGVCTLEDLA EQGIDDLADI EGLSDEQAGE 480
  481 LIMAARNICW FGDNA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..347] PSI-BLAST 109.0 Crystal structure of NusA from Thermotoga maritima: a structure-based role of the N-terminal domain
    2 View Details [348..427] PSI-BLAST 13.30103 NMR structure of the carboxyterminal domains of Escherichia coli NusA
    3 View Details [428..495] PSI-BLAST 21.0 NMR structure of the carboxyterminal domains of Escherichia coli NusA

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription termination factor activity
    		•  6.2940998830026 bayes_pls_golite062009
  • transcription regulator activity
    		•  3.30740271950804 bayes_pls_golite062009
  • binding
    		•  1.85922846397432 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.26537887642247 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.860693644487058 bayes_pls_golite062009
  • DNA binding
    		•  0.814370062643769 bayes_pls_golite062009
  • protein binding
    		•  0.731201599320953 bayes_pls_golite062009
  • structural molecule activity
    		•  0.570047646271216 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.440010017405756 bayes_pls_golite062009
  • translation regulator activity
    		•  0.31332179848255 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  0.263197317040851 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  0.19668406318255 bayes_pls_golite062009
  • catalytic activity
    		•  0.10089766806364 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle