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Protein Overview: AMY2_ARATH

General Information:
Name(s) found: AMY2_ARATH [Swiss-Prot]
Description(s) found:
Found 13 descriptions.
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  • Probable alpha-amylase 2 OS=Arabidopsis thaliana GN=AMY2 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 413 amino acids

    Gene Ontology:
    Cellular Component: extracellular region [TAS]
    Biological Process: carbohydrate metabolic process [IEA]
    Molecular Function: alpha-amylase activity [IEA][ISS]
    catalytic activity [IEA]
    calcium ion binding [IEA]
    cation binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGYYNNVFDE CNDQTDIGRV IRDGREVILQ AYNWESHKYD WWRNLDGKVP DIAKSGFTSA  60
   61 WLPPPSQSLA PEGYLPQDLY SLNSAYGSEH LLKSLLRKMK QYKVRAMADI VINHRVGTTR 120
  121 GHGGMYNRYD GISLPWDEHA VTSCTGGLGN RSTGDNFNGV PNVDHTQHFV RKDIIGWLRW 180
  181 LRNTVGFQDF RFDFARGYSA NYVKEYIGAA KPLFSVGECW DSCNYNGHGL DYNQDSHRQR 240
  241 IISWIDATGQ ISAAFDFTTK GILQEAVKGQ YWRLCDAQGK PPGVMGWWPS RAVTFLDNHD 300
  301 TGSTQAHWPF PSHHVMEGYA YILTHPGIPC VFYDHFYDWG SSIHDQIVKL IDIRRRQDIH 360
  361 SRSTVRVLKA ESNLYAAIVG EKICMKLGDG SWCPSGRDWT LATSGHRYAV WHK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..413] PSI-BLAST 63.69897 CRYSTAL AND MOLECULAR STRUCTURE OF BARLEY ALPHA-AMYLASE

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.32563207632796 bayes_pls_golite062009
  • hydrolase activity
    		•  0.85514037342026 bayes_pls_golite062009
  • hydrolase activity, acting on glycosyl bonds
    		•  0.80912338090552 bayes_pls_golite062009
  • hydrolase activity, hydrolyzing O-glycosyl compounds
    		•  0.41375210927547 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle