YRC Public Data Repository - Protein Structure Prediction

Protein:	AMY2_ARATH
Organism:	Arabidopsis thaliana
Length:	413 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AMY2_ARATH.

Description	E-value	Query Range	Subject Range
gi\|227117280, gi... - gi\|227117280\|ref\|YP_002819176.1\| trehalose-6-phosphate hydrolase [Vibrio cholerae O395], gi\|22701273... gi\|121588126, gi... - gi\|121588126\|ref\|ZP_01677873.1\| trehalose-6-phosphate hydrolase [Vibrio cholerae 2740-80], gi\|121547... gi\|124118206, gi... - gi\|153223398\|ref\|ZP_01953840.1\| trehalose-6-phosphate hydrolase [Vibrio cholerae MAK 757], gi\|124118... gi\|227008974, gi... - gi\|227081086\|ref\|YP_002809637.1\| trehalose-6-phosphate hydrolase [Vibrio cholerae M66-2], gi\|2270089... gi\|121628004, gi... - gi\|121730245\|ref\|ZP_01682627.1\| trehalose-6-phosphate hydrolase [Vibrio cholerae V52], gi\|121628004\|... gi\|229505484, gi... - gi\|229505484\|ref\|ZP_04394994.1\| trehalose-6-phosphate hydrolase [Vibrio cholerae BX 330286], gi\|2293... gi\|126512238, gi... - gi\|153817204\|ref\|ZP_01969871.1\| trehalose-6-phosphate hydrolase [Vibrio cholerae NCTC 8457], gi\|1265... gi\|254848046, gi... - gi\|254848046\|ref\|ZP_05237396.1\| trehalose-6-phosphate hydrolase [Vibrio cholerae MO10], gi\|254843751... gi\|9655368, gi\|1... - gi\|9655368\|gb\|AAF94073.1\| trehalose-6-phosphate hydrolase [Vibrio cholerae O1 biovar El Tor str. N16... gi\|11264124 - pir\|\|C82263 trehalose-6-phosphate hydrolase VC0911 [imported] - Vibrio cholerae (strain N16961 serog... gi\|153824062, gi... - gi\|229510846\|ref\|ZP_04400325.1\| trehalose-6-phosphate hydrolase [Vibrio cholerae B33], gi\|229350811\|... gi\|229517967, gi... - gi\|229517967\|ref\|ZP_04407411.1\| trehalose-6-phosphate hydrolase [Vibrio cholerae RC9], gi\|229344682\|... gi\|229608503, gi... - gi\|229608503\|ref\|YP_002879151.1\| trehalose-6-phosphate hydrolase [Vibrio cholerae MJ-1236], gi\|22937...	333.0	[0..11]	[412..3]

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Predicted Domain #1

Region A:
Residues: [1-413]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGYYNNVFDE CNDQTDIGRV IRDGREVILQ AYNWESHKYD WWRNLDGKVP DIAKSGFTSA  60
   61 WLPPPSQSLA PEGYLPQDLY SLNSAYGSEH LLKSLLRKMK QYKVRAMADI VINHRVGTTR 120
  121 GHGGMYNRYD GISLPWDEHA VTSCTGGLGN RSTGDNFNGV PNVDHTQHFV RKDIIGWLRW 180
  181 LRNTVGFQDF RFDFARGYSA NYVKEYIGAA KPLFSVGECW DSCNYNGHGL DYNQDSHRQR 240
  241 IISWIDATGQ ISAAFDFTTK GILQEAVKGQ YWRLCDAQGK PPGVMGWWPS RAVTFLDNHD 300
  301 TGSTQAHWPF PSHHVMEGYA YILTHPGIPC VFYDHFYDWG SSIHDQIVKL IDIRRRQDIH 360
  361 SRSTVRVLKA ESNLYAAIVG EKICMKLGDG SWCPSGRDWT LATSGHRYAV WHK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	63.69897
Match:	1amyA
Description:	CRYSTAL AND MOLECULAR STRUCTURE OF BARLEY ALPHA-AMYLASE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.32563207632796	bayes_pls_golite062009
hydrolase activity	0.85514037342026	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	0.80912338090552	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	0.41375210927547	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: