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Protein Overview: gi|41619044, gi|...

General Information:
Name(s) found: gi|41619044 [NCBI NR]
gi|21700907 [NCBI NR]
gi|18410146 [NCBI NR]
gi|15010654 [NCBI NR]
Description(s) found:
Found 13 descriptions.
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  • gi|41619044|gb|AAS10010.1| MYB transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|21700907|gb|AAM70577.1| At1g72650/F28P22_16 [Arabidopsis thaliana] [NCBI NR]
  • gi|18410146|ref|NP_565045.1| TRFL6 (TRF-LIKE 6); DNA binding / transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|15010654|gb|AAK73986.1| At1g72650/F28P22_16 [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 624 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: response to salt stress [IEP]
    response to cadmium ion [IEP]
    Molecular Function: DNA binding [IEA][ISS]
    transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTVVGTVED RRDMFEGNAQ TRITPFSSTN QIGNPVAYKL VRVSGDGSLV PATDEEILEV  60
   61 NDTDMHIPSD TCQTIGYLAT DEENVEVDET DMHIASDACQ TIGYLPAEGI PSRLSQIESS 120
  121 EAINSGLLHS DNVQPYTDQY NEEMLQKVEQ EERLENVHGS QMPSTPADAN IQCSNENNFF 180
  181 EEDQVHHEAL LQDECKMNES DMMERCSNAV ASPKETALSA AAQKPDFSRV RGEICLDNLP 240
  241 IKALQETFRA TFGRDTTVKD KTWLKRRIAM GLINSCDVPT TNLRVKDNKL IGNQEKSNDV 300
  301 TNAIRKEMGD DVRATKMKDA PSSTDHVNGH SNGGNHYYAS EDYSSEQRAA KRVRKPTRRY 360
  361 IEELSETDDK QQNDKSVIPS KDQRLSEKSE VRSISVSSGK RVTVTRMVSL AGSEIEVPYV 420
  421 SHVRRSRPRE NIMALLGCHS SYLEDKASAA ESNLNLSPSQ LSSEVVNRDS VEKSASRPVQ 480
  481 NEFATSDENN VEHILSEVDQ EMEPEHIDSS GNSSDENNIG VPIMQGGALR RKHHRAWTLS 540
  541 EIAKLVEGVS KYGAGKWSEI KKHLFSSHSY RTSVDLKDKW RNLLKTSFAQ SPSNSVGSLK 600
  601 KHGSMHIPTQ ILLRVRELAE KQSQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..184] deduced N/A No confident structure predictions are available.
    2 View Details [185..335] PSI-BLAST 31.69897 TRF2
    3 View Details [336..466] MSA 2.130994 View MSA. No confident structure predictions are available.
    4 View Details [467..624] PSI-BLAST 28.522879 c-Myb, DNA-binding domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.339357445627225 bayes_pls_golite062009
  • protein binding
    		•  0.0136825473848199 bayes_pls_golite062009
    3 No functions predicted.
    4
    Term Confidence Notes
  • binding
    		•  0.334577365229545 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.0696342306231097 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle