| Protein: | gi|41619044, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 624 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|41619044, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
740.0 | [0..1] | [624..1] |
|
Region A: Residues: [1-184] |
1 11 21 31 41 51
| | | | | |
1 MGTVVGTVED RRDMFEGNAQ TRITPFSSTN QIGNPVAYKL VRVSGDGSLV PATDEEILEV 60
61 NDTDMHIPSD TCQTIGYLAT DEENVEVDET DMHIASDACQ TIGYLPAEGI PSRLSQIESS 120
121 EAINSGLLHS DNVQPYTDQY NEEMLQKVEQ EERLENVHGS QMPSTPADAN IQCSNENNFF 180
181 EEDQ
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [185-335] |
1 11 21 31 41 51
| | | | | |
1 VHHEALLQDE CKMNESDMME RCSNAVASPK ETALSAAAQK PDFSRVRGEI CLDNLPIKAL 60
61 QETFRATFGR DTTVKDKTWL KRRIAMGLIN SCDVPTTNLR VKDNKLIGNQ EKSNDVTNAI 120
121 RKEMGDDVRA TKMKDAPSST DHVNGHSNGG N
|
| Detection Method: | |
| Confidence: | 31.69897 |
| Match: | 1h6pA |
| Description: | TRF2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.339357445627225 | bayes_pls_golite062009 |
| protein binding | 0.0136825473848199 | bayes_pls_golite062009 |
|
Region A: Residues: [336-466] |
1 11 21 31 41 51
| | | | | |
1 HYYASEDYSS EQRAAKRVRK PTRRYIEELS ETDDKQQNDK SVIPSKDQRL SEKSEVRSIS 60
61 VSSGKRVTVT RMVSLAGSEI EVPYVSHVRR SRPRENIMAL LGCHSSYLED KASAAESNLN 120
121 LSPSQLSSEV V
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [467-624] |
1 11 21 31 41 51
| | | | | |
1 NRDSVEKSAS RPVQNEFATS DENNVEHILS EVDQEMEPEH IDSSGNSSDE NNIGVPIMQG 60
61 GALRRKHHRA WTLSEIAKLV EGVSKYGAGK WSEIKKHLFS SHSYRTSVDL KDKWRNLLKT 120
121 SFAQSPSNSV GSLKKHGSMH IPTQILLRVR ELAEKQSQ
|
| Detection Method: | |
| Confidence: | 28.522879 |
| Match: | 1h88C |
| Description: | c-Myb, DNA-binding domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.334577365229545 | bayes_pls_golite062009 |
| transcription regulator activity | 0.0696342306231097 | bayes_pls_golite062009 |
