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Protein Overview: gi|110743039, gi...

General Information:
Name(s) found: gi|79330542 [NCBI NR]
gi|30695999 [NCBI NR]
gi|29028872 [NCBI NR]
gi|222424417 [NCBI NR]
gi|110743039 [NCBI NR]
Description(s) found:
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  • gi|79330542|ref|NP_001032053.1| RNase H domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|30695999|ref|NP_199921.2| RNase H domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|29028872|gb|AAO64815.1| At5g51080 [Arabidopsis thaliana] [NCBI NR]
  • gi|222424417|dbj|BAH20164.1| AT5G51080 [Arabidopsis thaliana] [NCBI NR]
  • gi|110743039|dbj|BAE99412.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • At5g51080 [Arabidopsis thaliana]gi|30695999|ref|NP_199921.2| RNase H domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 RNase H domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | RNase H domain-containing protein | chr5:20786248-20787901 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At5g51080 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • nuclease/ nucleic acid binding / ribonuclease H [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | RNase H family protein | chr5:20769022-20770675 REVERSE LENGTH=322 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • AT5G51080 protein OS=Arabidopsis thaliana GN=AT5G51080 PE=2 SV=1 [ARATH-contam.fasta]
  • AT5G51080 protein OS=Arabidopsis thaliana GN=At5g51080 PE=2 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 322 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: nucleic acid binding [IEA]
    ribonuclease H activity [IEA]
    nuclease activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRFSRARSY ISLVLFRKSS YVTSHIPWNQ CFYTSLKSSL KPASVSVSSV HCYSSRSKTA  60
   61 KSKMSKSSVS VSDSDKEKDA FFVVRKGDIV GIYKDLIDCQ AQVGSSVYDP PVSVYKGYSL 120
  121 LKDTEECLST VGLKKPLYVF RALDLKEDMF GALTPCLFQD QLPSASMSVE KLAELEPSAD 180
  181 TSYETCIIEF DGASKGNPGL SGAAAVLKTE DGSLIFKMRQ GLGIATNNAA EYHGLILGLK 240
  241 HAIEKGYTKI KVKTDSKLVC MQMKGQWKVN HEVLSKLHKE AKQLSDKCLS FEISHVLRSL 300
  301 NSDADEQANM AARLSEGEVE VA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..322] PSI-BLAST 44.39794 HIV RNase H (Domain of reverse transcriptase); HIV-1 reverse transcriptase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ribonuclease activity
    		•  3.91517707500372 bayes_pls_golite062009
  • endoribonuclease activity
    		•  3.00008907756136 bayes_pls_golite062009
  • ribonuclease H activity
    		•  2.37346218921366 bayes_pls_golite062009
  • hydrolase activity
    		•  2.30893115816458 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  2.26022264830742 bayes_pls_golite062009
  • nuclease activity
    		•  1.81796593394339 bayes_pls_golite062009
  • endonuclease activity
    		•  1.79009816048707 bayes_pls_golite062009
  • catalytic activity
    		•  1.62277843225829 bayes_pls_golite062009
  • exoribonuclease activity
    		•  1.48827607538468 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  1.34153791988846 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
    		•  0.8085201347205 bayes_pls_golite062009
  • exonuclease activity
    		•  0.39213900591465 bayes_pls_golite062009
  • endoribonuclease activity, producing 5'-phosphomonoesters
    		•  0.13187450705887 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.76

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle