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Protein Overview: gi|79324963, gi|...

General Information:
Name(s) found: gi|79324963 [NCBI NR]
gi|21360555 [NCBI NR]
gi|18411454 [NCBI NR]
gi|13605916 [NCBI NR]
gi|110743368 [NCBI NR]
Description(s) found:
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  • gi|79324963|ref|NP_001031566.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|21360555|gb|AAM47474.1| AT4g00830/A_TM018A10_14 [Arabidopsis thaliana] [NCBI NR]
  • gi|18411454|ref|NP_567192.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|13605916|gb|AAK32943.1|AF367357_1 AT4g00830/A_TM018A10_14 [Arabidopsis thaliana] [NCBI NR]
  • gi|110743368|dbj|BAE99571.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • AT4g00830/A_TM018A10_14 [Arabidopsis thaliana]gi|13605916|gb|AAK32943.1| AT4g00830/A_TM018A10_14 [Arabidopsis thaliana]gi|18411454|ref|NP_567192.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 RNA recognition motif (RRM)-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | RNA recognition motif (RRM)-containing protein | chr4:352782-354965 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • AT4g00830/A_TM018A10_14 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • RNA binding / nucleic acid binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:352782-354965 FORWARD LENGTH=495 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • AT4g00830/A_TM018A10_14 OS=Arabidopsis thaliana GN=At4g00830 PE=2 SV=1 [ARATH-contam.fasta]
  • Isoform of F4JHN3, AT4g00830/A_TM018A10_14 OS=Arabidopsis thaliana GN=At4g00830 PE=2 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 495 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: nucleic acid binding [IEA]
    nucleotide binding [IEA]
    RNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDARDNDDR VDFEEGSYSE MEDEVEEEQV EEYEEEEEED DDDDDVGNQN AEEREVEDYG  60
   61 DTKGGDMEDV QEEIAEDDDN HIDIETADDD EKPPSPIDDE DREKYSHLLS LPPHGSEVFI 120
  121 GGLPRDVGEE DLRDLCEEIG EIFEVRLMKD RDSGDSKGYA FVAFKTKDVA QKAIEELHSK 180
  181 EFKGKTIRCS LSETKNRLFI GNIPKNWTED EFRKVIEDVG PGVENIELIK DPTNTTRNRG 240
  241 FAFVLYYNNA CADYSRQKMI DSNFKLEGNA PTVTWADPKS SPEHSAAAAQ VKALYVKNIP 300
  301 ENTSTEQLKE LFQRHGEVTK IVTPPGKGGK RDFGFVHYAE RSSALKAVKD TERYEVNGQP 360
  361 LEVVLAKPQA ERKHDPSSYS YGAAPTPAPF VHPTFGGFAA APYGAMGAGL GIAGSFSQPM 420
  421 IYGRGAMPTG MQMVPMLLPD GRVGYVLQQP GMPMAAAPPQ RPRRNDRNNG SSGGSGRDNS 480
  481 HEHDGNRGGR RYRPY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..77] PSI-BLAST 45.522879 Nuclear ribonucleoprotein A1 (RNP A1, UP1)
    2 View Details [78..114] PSI-BLAST 17.39794 CG8781 protein
    3 View Details [115..413] PSI-BLAST 18.045757 No description for 2ghpA was found.
    4 View Details [414..495] MSA 2.280996 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • nucleic acid binding
    		•  4.33825636300428 bayes_pls_golite062009
  • binding
    		•  3.21467519876408 bayes_pls_golite062009
  • RNA binding
    		•  2.41328743949172 bayes_pls_golite062009
  • protein binding
    		•  2.17260848225967 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.58383432105811 bayes_pls_golite062009
  • mRNA binding
    		•  1.43710066986329 bayes_pls_golite062009
  • DNA binding
    		•  1.39336947685216 bayes_pls_golite062009
  • transcription factor activity
    		•  0.535968997434099 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.126508490547083 bayes_pls_golite062009
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle