| Protein: | gi|79324963, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 495 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|79324963, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
330.0 | [0..5] | [494..2] |
|
Region A: Residues: [1-77] |
1 11 21 31 41 51
| | | | | |
1 MSDARDNDDR VDFEEGSYSE MEDEVEEEQV EEYEEEEEED DDDDDVGNQN AEEREVEDYG 60
61 DTKGGDMEDV QEEIAED
|
| Detection Method: |  |
| Confidence: | 45.522879 |
| Match: | 1l3kA |
| Description: | Nuclear ribonucleoprotein A1 (RNP A1, UP1) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [78-114] |
1 11 21 31 41 51
| | | | | |
1 DDNHIDIETA DDDEKPPSPI DDEDREKYSH LLSLPPH
|
| Detection Method: | |
| Confidence: | 17.39794 |
| Match: | 1hl6A |
| Description: | CG8781 protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [115-413] |
1 11 21 31 41 51
| | | | | |
1 GSEVFIGGLP RDVGEEDLRD LCEEIGEIFE VRLMKDRDSG DSKGYAFVAF KTKDVAQKAI 60
61 EELHSKEFKG KTIRCSLSET KNRLFIGNIP KNWTEDEFRK VIEDVGPGVE NIELIKDPTN 120
121 TTRNRGFAFV LYYNNACADY SRQKMIDSNF KLEGNAPTVT WADPKSSPEH SAAAAQVKAL 180
181 YVKNIPENTS TEQLKELFQR HGEVTKIVTP PGKGGKRDFG FVHYAERSSA LKAVKDTERY 240
241 EVNGQPLEVV LAKPQAERKH DPSSYSYGAA PTPAPFVHPT FGGFAAAPYG AMGAGLGIA
|
| Detection Method: | |
| Confidence: | 18.045757 |
| Match: | 2ghpA |
| Description: | No description for 2ghpA was found. |
| Term | Confidence | Notes |
| nucleic acid binding | 4.33825636300428 | bayes_pls_golite062009 |
| binding | 3.21467519876408 | bayes_pls_golite062009 |
| RNA binding | 2.41328743949172 | bayes_pls_golite062009 |
| protein binding | 2.17260848225967 | bayes_pls_golite062009 |
| transcription regulator activity | 1.58383432105811 | bayes_pls_golite062009 |
| mRNA binding | 1.43710066986329 | bayes_pls_golite062009 |
| DNA binding | 1.39336947685216 | bayes_pls_golite062009 |
| transcription factor activity | 0.535968997434099 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.126508490547083 | bayes_pls_golite062009 |
|
Region A: Residues: [414-495] |
1 11 21 31 41 51
| | | | | |
1 GSFSQPMIYG RGAMPTGMQM VPMLLPDGRV GYVLQQPGMP MAAAPPQRPR RNDRNNGSSG 60
61 GSGRDNSHEH DGNRGGRRYR PY
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
