Protein Overview: lig-1

General Information:
Name(s) found:	lig-1 / CE37481 [WormBase]
Description(s) found: SHOW ONLY BEST	WBGene00002985 locus:lig-1 DNA ligase 1 status:Confirmed UniProt:Q27474 protein_id:CAD44112.2 [WormBase] gi\|71985278\|ref\|NP_741626.2\| LIGase family member (lig-1) [Caenorhabditis elegans] [NCBI NR] gi\|54110913\|emb\|CAD44112.2\| C. elegans protein C29A12.3b, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR] Hypothetical protein C29A12.3b [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas] CE37481 WBGene00002985 locus:lig-1 status:Confirmed SW:Q27474 protein_id:CAD44112.2 [wormpep150.fasta] 37481 WBGene00002985 locus:lig-1 status:Confirmed SW:Q27474 protein_id:CAD44112.2 [wormpep150-phg-orf-ecoli-rand.fasta] CE37481 WBGene00002985 locus:lig-1 status:Confirmed TR:Q8MQB3 protein_id:CAD44112.2 [WormBase_C-elegans_na_01-20-2005_combined_reversed.fasta] CE37481 WBGene00002985 locus:lig-1 status:Confirmed UniProt:Q27474 protein_id:CAD44112.2 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta] CE37481 WBGene00002985 locus:lig-1 status:Confirmed UniProt:Q27474 protein_id:CAD44112.2\| [wormORF-contam.fasta] LIGase family member (lig-1) [Caenorhabditis elegans] [nr-271106-contam.fasta] [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr] CE37481 WBGene00002985 locus:lig-1 status:Confirmed UniProt:Q27474 protein_id:CAD44112.2 DNA ligase 1 [wormpep246-ecoli-contam.fasta] Isoform of Q27474, Isoform b of DNA ligase 1 OS=Caenorhabditis elegans GN=lig-1 [CAEEL.fasta.20160308]
Organism:	Caenorhabditis elegans
Length:	210 amino acids
Gene Ontology:
Cellular Component:	NONE FOUND
Biological Process:	embryonic cleavage [IMP] DNA repair [IEA] DNA replication [IEA] embryonic development ending in birth or egg hatching [IMP ] DNA recombination [IEA] cytokinesis [IMP]
Molecular Function:	ATP binding [IEA] DNA binding [IEA] DNA ligase (ATP) activity [IEA]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFFSKAGKAA VEWAKGSKVP YKEFALTLEK IEELSGKKKV DELAQFFTKV LDFSPDDLTA  60
   61 CVYMSVNQLG PSYEGLELGV AENSLIKAVA KATGRTEGKI KEDLRAKGDL GTVAQQSRSN 120
  121 QKMLAVPKAL TVPTVFNKLT EIAKLSGTSA MNKKVDAISA LLIACQGIEA RFLVRMLAGK 180
  181 MRIGLGEQSV LSALGHAFTL SKITDQKRMP

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..210]	PSI-BLAST	52.0	Crystal Structure of Human DNA Ligase I bound to 5'-adenylated, nicked DNA

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.88

Protein Overview: lig-1

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: