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Protein Overview: gi|28827644, gi|...

General Information:
Name(s) found: gi|28827644 [NCBI NR]
gi|28393527 [NCBI NR]
gi|18417421 [NCBI NR]
Description(s) found:
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  • gi|28827644|gb|AAO50666.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|28393527|gb|AAO42184.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18417421|ref|NP_568302.1| tRNA (adenine-N1-)-methyltransferase [Arabidopsis thaliana] [NCBI NR]
  • unknown protein [Arabidopsis thaliana]gi|28393527|gb|AAO42184.1| unknown protein [Arabidopsis thaliana]gi|18417421|ref|NP_568302.1| expressed protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • | Symbols: | similar to unnamed protein product [Vitis vinifera] (GB:CAO14741.1); contains InterPro domain tRNA methyltransferase complex GCD14 subunit (InterPro:IPR014816) | chr5:4707521-4709025 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • S-adenosylmethionine-dependent methyltransferase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:4707518-4709022 FORWARD LENGTH=318 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Putative uncharacterized protein At5g14600 OS=Arabidopsis thaliana GN=At5g14600 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 318 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: tRNA methylation [IEA]
    Molecular Function: tRNA (adenine-N1-)-methyltransferase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPTESKKAF SFKRCIEDGD LVIVYERHDV MKPVKVSKDG VLQNRFGVYK HSDWIGKPLG  60
   61 TKVFSNKGKF VYLLAPTPEL WTLVLSHRTQ ILYIADISFV VMYLEVVPGC VVLESGTGSG 120
  121 SLSTSLARAV APTGHVYSFD FHEQRAVSAR EDFEKTGISS LVTVEVRDIQ GEGFPEKLSG 180
  181 LADSVFLDLP QPWLAVPSAA KMLKQDGVLC SFSPCIEQVQ RTCEVLRSDF IEIRTFEVLL 240
  241 RTYEVKEVKM DTSSMVGESH EEDNEGMRPC KRKHRSNEND TVSQDNSSNA SSVVMARPCS 300
  301 EARGHTGYLT FARLQCLA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..318] PSI-BLAST 32.09691 Human putative tRNA(1-methyladenosine)methyltransferase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • tRNA (adenine)-methyltransferase activity
    		•  8.68185118956881 bayes_pls_golite062009
  • tRNA (adenine-N1-)-methyltransferase activity
    		•  8.68185118956881 bayes_pls_golite062009
  • tRNA methyltransferase activity
    		•  7.81931840222208 bayes_pls_golite062009
  • S-adenosylmethionine-dependent methyltransferase activity
    		•  7.024459985818 bayes_pls_golite062009
  • methyltransferase activity
    		•  4.15445027778357 bayes_pls_golite062009
  • N-methyltransferase activity
    		•  4.07806017452628 bayes_pls_golite062009
  • transferase activity, transferring one-carbon groups
    		•  4.07153733729662 bayes_pls_golite062009
  • protein methyltransferase activity
    		•  3.92746815303714 bayes_pls_golite062009
  • RNA methyltransferase activity
    		•  3.07428840534971 bayes_pls_golite062009
  • histone methyltransferase activity
    		•  2.99461585647365 bayes_pls_golite062009
  • transferase activity
    		•  2.926540904444 bayes_pls_golite062009
  • arginine N-methyltransferase activity
    		•  2.41876112831625 bayes_pls_golite062009
  • protein-arginine N-methyltransferase activity
    		•  2.41876112831625 bayes_pls_golite062009
  • rRNA methyltransferase activity
    		•  2.29640050660273 bayes_pls_golite062009
  • DNA-methyltransferase activity
    		•  2.18991764495147 bayes_pls_golite062009
  • histone-arginine N-methyltransferase activity
    		•  2.04296107639729 bayes_pls_golite062009
  • tRNA (cytosine-5-)-methyltransferase activity
    		•  1.88889414729709 bayes_pls_golite062009
  • tRNA (cytosine)-methyltransferase activity
    		•  1.88889414729709 bayes_pls_golite062009
  • protein-arginine omega-N monomethyltransferase activity
    		•  1.66871163498737 bayes_pls_golite062009
  • catalytic activity
    		•  1.25333584501255 bayes_pls_golite062009
  • histone methyltransferase activity (H4-R3 specific)
    		•  1.1103522853299 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.914549843668268 bayes_pls_golite062009
  • protein-arginine omega-N asymmetric methyltransferase activity
    		•  0.89325812193225 bayes_pls_golite062009
  • DNA binding
    		•  0.86027591375666 bayes_pls_golite062009
  • binding
    		•  0.777596419415505 bayes_pls_golite062009
  • site-specific DNA-methyltransferase (adenine-specific) activity
    		•  0.703178429468566 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.616949327277483 bayes_pls_golite062009
  • rRNA (adenine) methyltransferase activity
    		•  0.533090627724779 bayes_pls_golite062009
  • rRNA (adenine-N6,N6-)-dimethyltransferase activity
    		•  0.455449410561251 bayes_pls_golite062009
  • RNA binding
    		•  0.417524996559564 bayes_pls_golite062009
  • protein-arginine omega-N symmetric methyltransferase activity
    		•  0.364369105571521 bayes_pls_golite062009
  • tRNA (guanine) methyltransferase activity
    		•  0.203168546434167 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle