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View Structure Prediction Details

Protein: gi|28827644, gi|...
Organism: Arabidopsis thaliana
Length: 318 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|28827644, gi|....

Description E-value Query
Range
Subject
Range
gi|11358041, gi|... - gi|7573309|emb|CAB87627.1| putative protein [Arabidopsis thaliana], pir||T48633 hypothetical protein...
228.0 [0..1] [309..1]

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Predicted Domain #1
Region A:
Residues: [1-318]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPTESKKAF SFKRCIEDGD LVIVYERHDV MKPVKVSKDG VLQNRFGVYK HSDWIGKPLG  60
   61 TKVFSNKGKF VYLLAPTPEL WTLVLSHRTQ ILYIADISFV VMYLEVVPGC VVLESGTGSG 120
  121 SLSTSLARAV APTGHVYSFD FHEQRAVSAR EDFEKTGISS LVTVEVRDIQ GEGFPEKLSG 180
  181 LADSVFLDLP QPWLAVPSAA KMLKQDGVLC SFSPCIEQVQ RTCEVLRSDF IEIRTFEVLL 240
  241 RTYEVKEVKM DTSSMVGESH EEDNEGMRPC KRKHRSNEND TVSQDNSSNA SSVVMARPCS 300
  301 EARGHTGYLT FARLQCLA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.09691
Match: 2b25A
Description: Human putative tRNA(1-methyladenosine)methyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
tRNA (adenine)-methyltransferase activity 8.68185118956881 bayes_pls_golite062009
tRNA (adenine-N1-)-methyltransferase activity 8.68185118956881 bayes_pls_golite062009
tRNA methyltransferase activity 7.81931840222208 bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity 7.024459985818 bayes_pls_golite062009
methyltransferase activity 4.15445027778357 bayes_pls_golite062009
N-methyltransferase activity 4.07806017452628 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 4.07153733729662 bayes_pls_golite062009
protein methyltransferase activity 3.92746815303714 bayes_pls_golite062009
RNA methyltransferase activity 3.07428840534971 bayes_pls_golite062009
histone methyltransferase activity 2.99461585647365 bayes_pls_golite062009
transferase activity 2.926540904444 bayes_pls_golite062009
arginine N-methyltransferase activity 2.41876112831625 bayes_pls_golite062009
protein-arginine N-methyltransferase activity 2.41876112831625 bayes_pls_golite062009
rRNA methyltransferase activity 2.29640050660273 bayes_pls_golite062009
DNA-methyltransferase activity 2.18991764495147 bayes_pls_golite062009
histone-arginine N-methyltransferase activity 2.04296107639729 bayes_pls_golite062009
tRNA (cytosine-5-)-methyltransferase activity 1.88889414729709 bayes_pls_golite062009
tRNA (cytosine)-methyltransferase activity 1.88889414729709 bayes_pls_golite062009
protein-arginine omega-N monomethyltransferase activity 1.66871163498737 bayes_pls_golite062009
catalytic activity 1.25333584501255 bayes_pls_golite062009
histone methyltransferase activity (H4-R3 specific) 1.1103522853299 bayes_pls_golite062009
transcription regulator activity 0.914549843668268 bayes_pls_golite062009
protein-arginine omega-N asymmetric methyltransferase activity 0.89325812193225 bayes_pls_golite062009
DNA binding 0.86027591375666 bayes_pls_golite062009
binding 0.777596419415505 bayes_pls_golite062009
site-specific DNA-methyltransferase (adenine-specific) activity 0.703178429468566 bayes_pls_golite062009
nucleic acid binding 0.616949327277483 bayes_pls_golite062009
rRNA (adenine) methyltransferase activity 0.533090627724779 bayes_pls_golite062009
rRNA (adenine-N6,N6-)-dimethyltransferase activity 0.455449410561251 bayes_pls_golite062009
RNA binding 0.417524996559564 bayes_pls_golite062009
protein-arginine omega-N symmetric methyltransferase activity 0.364369105571521 bayes_pls_golite062009
tRNA (guanine) methyltransferase activity 0.203168546434167 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle