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Protein Overview: gi|20856106, gi|...

General Information:
Name(s) found: gi|79317851 [NCBI NR]
gi|22329516 [NCBI NR]
gi|20856106 [NCBI NR]
gi|17933303 [NCBI NR]
gi|145323872 [NCBI NR]
gi|145323870 [NCBI NR]
Description(s) found:
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  • gi|79317851|ref|NP_001031031.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|22329516|ref|NP_172725.2| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|20856106|gb|AAM26648.1| At1g12650/T12C24_1 [Arabidopsis thaliana] [NCBI NR]
  • gi|17933303|gb|AAL48234.1|AF446361_1 At1g12650/T12C24_1 [Arabidopsis thaliana] [NCBI NR]
  • gi|145323872|ref|NP_001077525.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|145323870|ref|NP_001077524.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • At1g12650/T12C24_1 [Arabidopsis thaliana]gi|17933303|gb|AAL48234.1| At1g12650/T12C24_1 [Arabidopsis thaliana]gi|22329516|ref|NP_172725.2| expressed protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | similar to unnamed protein product [Vitis vinifera] (GB:CAO63667.1); contains InterPro domain Protein of unknown function DUF947 (InterPro:IPR009292) | chr1:4306181-4307671 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At1g12650/T12C24_1 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292); Has 700 Blast hits to 631 proteins in 192 species: Archae - 0; Bacteria - 32; Metazoa - 138; Fungi - 168; Plants - 60; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink). | chr1:4306183-4307673 FORWARD LENGTH=248 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:4306183-4307673 FORWARD LENGTH=248 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292); Has 700 Blast hits to 631 proteins in 192 species: Archae - 0; Bacteria - 32; Metazoa - 138; Fungi - 168; Plants - 60; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink). | chr1:4306183-4307673 FORWARD LENGTH=248 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At1g12650/T12C24_1 OS=Arabidopsis thaliana GN=At1g12650 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 248 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGAGKFEGS SSKIVFEDSE EDEDLSCSSV SSSDEEEETE KELTFEEIHK LRADGSKAVP  60
   61 WKPNQVKKTG RARANKNRPM EVSSKKPVSR YREVVHVPKK EVRDPRFNQL GGTLDVEGFR 120
  121 KRYNFFFEDK LPVEREELKK KLKKTKNPEE IDELKNQLTY VEKMLKYEPS TQNKGAAILT 180
  181 EHKKKEREAA KEGKRPYYLK KSEIRKQTLI EKYNSLKESG KLTSYLDKRR KKNATKDHRF 240
  241 MPYRRAEE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..248] FFAS03 1.1 BRCA2 helical domain; BRCA2 tower domain; OB-fold domains of BRCA2


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle