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View Structure Prediction Details

Protein: gi|20856106, gi|...
Organism: Arabidopsis thaliana
Length: 248 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20856106, gi|....

Description E-value Query
Range
Subject
Range
gi|114607495 - gi|114607495|ref|XP_001136227.1| PREDICTED: similar to testis intracellular mediator protein isoform...
239.0 [0..20] [245..314]

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Predicted Domain #1
Region A:
Residues: [1-248]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGAGKFEGS SSKIVFEDSE EDEDLSCSSV SSSDEEEETE KELTFEEIHK LRADGSKAVP  60
   61 WKPNQVKKTG RARANKNRPM EVSSKKPVSR YREVVHVPKK EVRDPRFNQL GGTLDVEGFR 120
  121 KRYNFFFEDK LPVEREELKK KLKKTKNPEE IDELKNQLTY VEKMLKYEPS TQNKGAAILT 180
  181 EHKKKEREAA KEGKRPYYLK KSEIRKQTLI EKYNSLKESG KLTSYLDKRR KKNATKDHRF 240
  241 MPYRRAEE

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.1
Match: 1miuA
Description: BRCA2 helical domain; BRCA2 tower domain; OB-fold domains of BRCA2
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle