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Protein Overview: gi|79319015, gi|...

General Information:
Name(s) found: gi|79319015 [NCBI NR]
gi|20466069 [NCBI NR]
gi|18397885 [NCBI NR]
gi|16604308 [NCBI NR]
Description(s) found:
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  • gi|79319015|ref|NP_001031121.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|20466069|gb|AAM19956.1| At1g31300/T19E23_12 [Arabidopsis thaliana] [NCBI NR]
  • gi|18397885|ref|NP_564377.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|16604308|gb|AAL24160.1| At1g31300/T19E23_12 [Arabidopsis thaliana] [NCBI NR]
  • At1g31300/T19E23_12 [Arabidopsis thaliana]gi|16604308|gb|AAL24160.1| At1g31300/T19E23_12 [Arabidopsis thaliana]gi|18397885|ref|NP_564377.1| expressed protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G19645.2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G19645.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70221.1); contains InterPro domain TRAM, L [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At1g31300/T19E23_12 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G19645.2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G19645.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70221.1); contains InterPro domain TRAM, LAG1 and CLN8 homology; (InterPro:IPR006634); contains InterPro domain Protein of unknown function DUF887, TLC-like (InterPro:IPR010283) | chr1:11194289-11195936 FORWARD [TAIR_A_Thaliana_na_04-12-2008_reversed.fasta]
  • | Symbols: | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein | chr1:11194308-11195955 FORWARD LENGTH=278 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At1g31300/T19E23_12 OS=Arabidopsis thaliana GN=At1g31300 PE=2 SV=1 [ARATH-contam.fasta]
  • At1g31300/T19E23_12 OS=Arabidopsis thaliana GN=At1g31300 PE=1 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 278 amino acids

    Gene Ontology:
    Cellular Component: integral to membrane [IEA]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTTSLQTIG AIKSYHHQAQ HLVKNYLLAD PFIPYTSVLT GIFLCKVVYD LCHFISNSHS  60
   61 KTYIILTKIQ RIEWNNRGIS TVHAIFISAM SLYFVFWSDL FSDRWHNDLV VFRSSRLSSL 120
  121 GLGISIGYFL ADLGMIFWKY PSLGGIEYIV HHSLSGVAVA YSLFSGEGQL YTYMVLISEI 180
  181 TTPEINLRWY LDTAGMKKSL AYVVNGVFIF LAWLVARILL FIYMFYHVYL HYNQVMRMHI 240
  241 FGYVLVFGVP AALGVMNLIW FGKIVRGVKK TLAKRCEC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..143] MSA 4.101993 View MSA. No confident structure predictions are available.
    2 View Details [144..278] MSA 5.101984 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle