YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|79319015, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTTSLQTIG AIKSYHHQAQ HLVKNYLLAD PFIPYTSVLT GIFLCKVVYD LCHFISNSHS  60
   61 KTYIILTKIQ RIEWNNRGIS TVHAIFISAM SLYFVFWSDL FSDRWHNDLV VFRSSRLSSL 120
  121 GLGISIGYFL ADLGMIFWKY PSLGGIEYIV HHSLSGVAVA YSLFSGEGQL YTYMVLISEI 180
  181 TTPEINLRWY LDTAGMKKSL AYVVNGVFIF LAWLVARILL FIYMFYHVYL HYNQVMRMHI 240
  241 FGYVLVFGVP AALGVMNLIW FGKIVRGVKK TLAKRCEC

Type	Start	End	Confidence
Cytoplasmic	1	78	0.65
Transmembrane Helix	79	97	0.94
Non-Cytoplasmic	98	116	0.60
Transmembrane Helix	117	138	0.87
Cytoplasmic	139	147	0.53
Transmembrane Helix	148	165	0.59
Non-Cytoplasmic	166	169	0.43
Transmembrane Helix	170	190	0.47
Cytoplasmic	191	200	0.86
Transmembrane Helix	201	223	0.89
Non-Cytoplasmic	224	239	0.81
Transmembrane Helix	240	261	0.95
Cytoplasmic	262	278	0.90