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Protein Overview: VP52A_ARATH

General Information:
Name(s) found: VP52A_ARATH [Swiss-Prot]
Description(s) found:
Found 11 descriptions.
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  • Vacuolar protein sorting-associated protein 52 A OS=Arabidopsis thaliana GN=VPS52 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 707 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IDA]
    Golgi apparatus [IDA]
    Golgi membrane [IDA]
    Biological Process: pollen tube growth [IMP]
    sexual reproduction [IMP]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDISIDALG QTMGDFSNHE KLGFDLGAFV GDLAFEEDSG SEDISLEGLQ QELEECESDE  60
   61 VVANILSSGD KLREYAKGVE NNLRKVELDS IEDYIKESDN LVSLHDQIRD CDSILSQMET 120
  121 LLSGFQEEIG SISSDIKILQ EKSMDMGLRL KNRRVAESKL AKFVEDIIVP PKMIDVIVDG 180
  181 EVNEEYMKTL EILSKKLKFV EADQAVKSSK ALKDVEPELE KLRQKAISKV YDFIVQKLIA 240
  241 LRKPKTNIQI LQQSVLLKYK YIISFLKEHG KEVFMDVRAA YIDTMNKVLS AHFRAYIQAL 300
  301 EKLQLDIATA YDLIGVETRT TGLFSRAREP LKNRSAVFAL GDRIKIIKDI DQPALIPHIA 360
  361 EASSLKYPYE VLFRSLHKLL MDTATSEYMF CDDFFGEESI FYEIFAGPFS VIDEHFNPVL 420
  421 SNCFDAIGLM LMIRIIHHHQ LIMSRRRIPC LDSYLDKVNI SLWPRFKMVF DSHLSSLRDA 480
  481 NIKTLWEDDV HPHYVMRRYA EFTASFIHLN VEYGDGQLDI NLERLRMAVD GLILKLAKLF 540
  541 PRPKQQIVFL INNYDMTIAV LKEAGPEGGK IQMHFEEMLK SNTSLFVEEL LVEHFSDLIK 600
  601 FVKNRASEDS SLNPERSITI AEVEPLVKDF GSRWKTAIEL MDKDIITSFS NFLCGMDILR 660
  661 AALTQLLLYY TRLTDCIKKI DGGSALNRDL VSIQSIMYEI RKYSKTF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..362] PSI-BLAST 11.39794 Heavy meromyosin subfragment
    2 View Details [363..707] PSI-BLAST 9.0 No description for 2pftA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.88

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle