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Protein Overview: gi|28416463, gi|...

General Information:
Name(s) found: gi|42567996 [NCBI NR]
gi|28416463 [NCBI NR]
gi|19310469 [NCBI NR]
gi|110738085 [NCBI NR]
Description(s) found:
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  • gi|42567996|ref|NP_197560.2| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|28416463|gb|AAO42762.1| At5g20600/F7C8_190 [Arabidopsis thaliana] [NCBI NR]
  • gi|19310469|gb|AAL84969.1| AT5g20600/F7C8_190 [Arabidopsis thaliana] [NCBI NR]
  • gi|110738085|dbj|BAF00976.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • At5g20600/F7C8_190 [Arabidopsis thaliana]gi|19310469|gb|AAL84969.1| AT5g20600/F7C8_190 [Arabidopsis thaliana]gi|42567996|ref|NP_197560.2| expressed protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | similar to unnamed protein product [Vitis vinifera] (GB:CAO43199.1); contains InterPro domain Nucleolar, Nop52; (InterPro:IPR010301) | chr5:6966347-6967945 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • AT5g20600/F7C8_190 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At5g20600/F7C8_190 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: preribosome, small subunit precursor; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleolar, Nop52 (InterPro:IPR010301); Has 543 Blast hits to 530 proteins in 201 species: Archae - 0; Bacteria - 10; Metazoa - 211; Fungi - 164; Plants - 46; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink). | chr5:6966345-6967943 REVERSE LENGTH=532 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • AT5g20600/F7C8_190 OS=Arabidopsis thaliana GN=At5g20600 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 532 amino acids

    Gene Ontology:
    Cellular Component: preribosome, small subunit precursor [IEA]
    Biological Process: rRNA processing [IEA]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKRNRVPPA EQALPIEEDC KSLIKKLASC KQSIRDRSLR TVLRTWLPEQ TEISDEDMKK  60
   61 LWQGIFYCVW HADKSLYQSE LIDRLSSALQ SLPLPLSIHY FTVFLFTMRR EWSRIDRLRL 120
  121 DKFYLLIRRF LHGFFSLIDS NSWDLEFTRR LMGILFDGTL LADDKFQGNG VNYHITSAFV 180
  181 EELRPFLPLR KEVLELLFAP FVKIMGVVND KILVGKIKSN LFDELLKMGK KLLIIKQSGD 240
  241 DAVPEDDDVV VLGSIALSME FAKRFYELGS SPECHQGNRK LIFALHKEFL QLEKDMSSSS 300
  301 IEVSIVEASR PGNDEVPESV PVSESNTNVV SKSKKIVANG SSSKKKGLKK CSKTKKDSVK 360
  361 KGAVMDSVVD LGNKDESFDE TMISDLRQEF EKIASEMSPS KSEVASVCDV AEPVSVSKKT 420
  421 KKRKRENKGE EQVSTVNRDA AETSLAGPSS EKSSKRVRFA MKNNLVWKPH CPLPPQDLRC 480
  481 PPSATPRGSA LKQGIPAGPV RELASRKTKK KVKPAARRGV KSIKNLKKKL SP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..230] MSA 4.068962 View MSA. No confident structure predictions are available.
    2 View Details [231..417] deduced N/A No confident structure predictions are available.
    3 View Details [418..532] MSA 3.229997 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.80

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle