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View Structure Prediction Details

Protein: gi|28416463, gi|...
Organism: Arabidopsis thaliana
Length: 532 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|28416463, gi|....

Description E-value Query
Range
Subject
Range
gi|27882022 - gi|27882022|gb|AAH43851.1| MGC53677 protein [Xenopus laevis]
318.0 [0..14] [312..1]

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Predicted Domain #1
Region A:
Residues: [1-230]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKRNRVPPA EQALPIEEDC KSLIKKLASC KQSIRDRSLR TVLRTWLPEQ TEISDEDMKK  60
   61 LWQGIFYCVW HADKSLYQSE LIDRLSSALQ SLPLPLSIHY FTVFLFTMRR EWSRIDRLRL 120
  121 DKFYLLIRRF LHGFFSLIDS NSWDLEFTRR LMGILFDGTL LADDKFQGNG VNYHITSAFV 180
  181 EELRPFLPLR KEVLELLFAP FVKIMGVVND KILVGKIKSN LFDELLKMGK 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [231-417]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KLLIIKQSGD DAVPEDDDVV VLGSIALSME FAKRFYELGS SPECHQGNRK LIFALHKEFL  60
   61 QLEKDMSSSS IEVSIVEASR PGNDEVPESV PVSESNTNVV SKSKKIVANG SSSKKKGLKK 120
  121 CSKTKKDSVK KGAVMDSVVD LGNKDESFDE TMISDLRQEF EKIASEMSPS KSEVASVCDV 180
  181 AEPVSVS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [418-532]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKTKKRKREN KGEEQVSTVN RDAAETSLAG PSSEKSSKRV RFAMKNNLVW KPHCPLPPQD  60
   61 LRCPPSATPR GSALKQGIPA GPVRELASRK TKKKVKPAAR RGVKSIKNLK KKLSP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle