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Protein Overview: LSM1A_ARATH

General Information:
Name(s) found: LSM1A_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|20334848|gb|AAM16180.1| At1g19120/F14D16_26 [Arabidopsis thaliana] [NCBI NR]
  • gi|18394697|ref|NP_564072.1| small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative [Arabidopsis thaliana] [NCBI NR]
  • gi|15724180|gb|AAL06482.1|AF411792_1 At1g19120/F14D16_26 [Arabidopsis thaliana] [NCBI NR]
  • Sm-like protein LSM1A OS=Arabidopsis thaliana GN=LSM1A PE=1 SV=1 [Swiss-Prot]
  • At1g19120/F14D16_26 [Arabidopsis thaliana]gi|15724180|gb|AAL06482.1| At1g19120/F14D16_26 [Arabidopsis thaliana]gi|18394697|ref|NP_564072.1| small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Small nuclear ribonucleoprotein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative | chr1:6608279-6609153 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At1g19120/F14D16_26 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Small nuclear ribonucleoprotein family protein | chr1:6608288-6609162 FORWARD LENGTH=128 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At1g19120/F14D16_26 OS=Arabidopsis thaliana GN=At1g19120 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 128 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ISS]
    small nucleolar ribonucleoprotein complex [ISS]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWAAPDDIF FSTSLAAYLD KKLLVLLRDG RKLMGLLRSF DQFANAVLEE AYERVIVGDL  60
   61 YCDIPLGLYI IRGENVVLIG ELDVEKEELP AHMVQVPEAE IKRAQKAEKE EMLLKGTMRK 120
  121 RMEFLDLD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..128] PSI-BLAST 16.09691 D1 core SNRNP protein


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle