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View Structure Prediction Details

Protein: LSM1A_ARATH
Organism: Arabidopsis thaliana
Length: 128 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LSM1A_ARATH.

Description E-value Query
Range
Subject
Range
gi|92868138 - gi|92868138|gb|ABE78228.1| Like-Sm ribonucleoprotein-related, core [Medicago truncatula]
139.0 [0..1] [128..1]

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Predicted Domain #1
Region A:
Residues: [1-128]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWAAPDDIF FSTSLAAYLD KKLLVLLRDG RKLMGLLRSF DQFANAVLEE AYERVIVGDL  60
   61 YCDIPLGLYI IRGENVVLIG ELDVEKEELP AHMVQVPEAE IKRAQKAEKE EMLLKGTMRK 120
  121 RMEFLDLD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.09691
Match: 1b34A
Description: D1 core SNRNP protein
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle